DY305923

Overview
NameDY305923
Unique NameDY305923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 4.285e-56
Identity = 110/189 (58.20%), Postives = 134/189 (70.90%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPS 786
            GTTTLAF F  GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L  +CR++EL NK  ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  F+VGSGS YAYGVLD G + DM+            + A  ++A SGG       G +G  + S
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVS 243          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 8.081e-55
Identity = 111/209 (53.11%), Postives = 140/209 (66.99%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            AP  ALP      EF       ++ K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  +ISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S              AT +++ SGG  N
Sbjct:   39 APELALPRGMQPTEFLRSFGDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVN 247          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 4.011e-54
Identity = 115/232 (49.57%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   55 DMKLDTSGLESTSPFFGSGDELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            +  L++  +   S F      L     A+P   L   TD D    D K  + H  GTTTLAF F+ G++VA DSRA+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K +ISV  ASK+L+N++Y Y+G GLS+GTMI G+  + GP +YYVDS+G RLKG  F VGSG  +AYGVLDS YK+D+S              A  ++A SGG  N
Sbjct:   23 EQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTD-DSRNPDCKIKIAH--GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 251          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 2.600e-53
Identity = 115/232 (49.57%), Postives = 146/232 (62.93%), Query Frame = 1
Query:   82 ESTSPFFGSGDELCPELSA----APSFALPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            ES  P  GSG    P   +    +P  ALP      EF +      +    ++ A GTTTLAF F+ GV+ A DSRAS G YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  +ISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ ++S              AT +++ SGG  N
Sbjct:   16 ESALPVAGSGRRSDPGHYSFSMRSPELALPRGMKPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 2.600e-53
Identity = 108/209 (51.67%), Postives = 140/209 (66.99%), Query Frame = 1
Query:  139 APSFALPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            +P  ALP      EF +      ++K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  +ISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ +AYGV+DSGY+ D+S              AT +++ SGG  N
Sbjct:   39 SPELALPRGMQPTEFFRSLGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 247          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 3.395e-53
Identity = 109/209 (52.15%), Postives = 137/209 (65.55%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            AP  ALP       F       ++    ++ A GTTTLAF F+ GV+VA DSRA+ G YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  +ISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S              AT ++  SGG  N
Sbjct:   39 APELALPRGMQPTAFLRSFGGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 247          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.874e-52
Identity = 110/211 (52.13%), Postives = 138/211 (65.40%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF--------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            AP  A+P      EF        +K+ +  + H  GTTTLAF F+ GV+VA DSRA+ G YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  +ISV+ ASKLL+N++Y YRGM LS+G+MI GWD+ GPGLYYVD  G RL G  FS GSGS YAYGV+DSGY+  +S              AT +++ SGG  N
Sbjct:   39 APELAVPRGMQPTEFFQSLGENGEKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIIN 247          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.600e-42
Identity = 96/221 (43.44%), Postives = 131/221 (59.28%), Query Frame = 1
Query:  124 PELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPS 786
            P L  A  +A+P   D   F +     L H  GTTTLAF F+ GV+ AAD+R+S G Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +GP L+YV S+G RL+G  FSVGSGSPYAYGVLD GY++DMS              AT ++A SGG  +       G E  S
Sbjct:   19 PHLPRAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVS 237          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.524e-40
Identity = 93/216 (43.06%), Postives = 127/216 (58.80%), Query Frame = 1
Query:  130 LSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGME 777
            L  A  +A+P   D   F +     L H  GTTTLAF F+ GV+ AAD+R+S G Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +GP L+YV S+G  L+G  FSVGSGSPYAYGVLD GY +DM+              AT ++A SGG  +       G E
Sbjct:   21 LPQAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWE 234          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.882e-26
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  412 RLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            RL+ L N  +ISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSG+++D+S
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLS 85          
The following BLAST results are available for this feature:
BLAST of DY305923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB5_CHICK4.285e-5658.20Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]
PSB8_RAT8.081e-5553.11Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB5_YEAST4.011e-5449.57Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB8_HUMAN2.600e-5349.57Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB8_BOVIN2.600e-5351.67Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_MOUSE3.395e-5352.15Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_CANFA2.874e-5252.13Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB11_HUMAN4.600e-4243.44Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE2.524e-4043.06Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB8_PIG7.882e-2662.35Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305923 ID=DY305923; Name=DY305923; organism=Citrus sinensis; type=EST; length=1275bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAAAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTC
TCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTA
CAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAAAATAGCTA
TTTATCCTGCAACATTCAAAAATGCACCCAGTGGTGGTGGTTGCAACCGT
TTATTATGTGGAACCAAAGGAATGGAAAAACCTTCGGGTATGTAATGTTT
GAGAACTTCCTACAATTATTATCAACCACCCCCNCGGGGTGAGANTACGA
AATGGCTGAGATAACAGGGGGCATATTTAATCTTGTGTAANATGGCCACA
GTTGTTAGAATTTCCTCAAATTTAGAAAAATACAGGGAGGAAGTGCTGGG
AAATTGCCTGCGAANTGTAGAGAAGGTCTTGTGTGAGTGCTTCGGGGTGG
ATACTCGTTGTAATCACTTGAGAAGTGTAATGCGCTGGGTGGTGAGGANG
GGGGGTTCCTGGTGTGAGGTGGAGTGGTCTGGGAGGTTGGGTTGGGGTGT
TCCACATTTGGGATGGGAGTGAGGCAATGGGTATGATGGGGAGGATGTTA
GCGAGGGTAGGAGGAAGAGGGAAGGAGCGGGTGGGGGATGAGGTGAGAGG
TTATATAGTTAGATTGATGTATGAAATTTACGCTTGCAGAGTAGGCACCG
CNGAGGTCATGCATCAATACGTATC
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