DY305923

Overview
NameDY305923
Unique NameDY305923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.312e-24
Identity = 59/177 (33.33%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  208 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSG 735
            K+ KGTTT+  +  +G+++A++ RA+MG +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+ GPG+Y +D+ GG ++ TR S  GSGSP AYGVL+  Y+ +M+            + AT +++ SG
Sbjct:    5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASG 181          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.649e-24
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 663
            KGTTT+    K+GV+ A + RASMG  I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  KIS+  A+ L ANIL+S R     V T++ G DE G  +Y +D  GG +     S GSGSP AYGVL+  Y  ++
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDEL 156          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.100e-22
Identity = 62/176 (35.23%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGG 741
            KGTTT+  + K+GV++A + RA+MG +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +RK +V   + L +N+L SYR     V  +I G D  G  +Y +D  GG ++     + GSGS  AYGVL+  +  ++             Y A  +++ SG G
Sbjct:   10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDG 185          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.456e-19
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGME 777
            KGTTT+  I  + V++A D RAS+G  ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D   G  L+ +D  GG  +   F + GSGSP AYGVL++GY  DMS              A  ++  SG G +  +    G++
Sbjct:    5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 193          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.348e-17
Identity = 63/189 (33.33%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGME 777
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++ GSGS Y YG  D+ YK DMS              A  ++  SGG  + ++   +G+E
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVE 202          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.348e-17
Identity = 63/189 (33.33%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGME 777
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++ GSGS Y YG  D+ YK DMS              A  ++  SGG  + ++   +G+E
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVE 202          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.121e-17
Identity = 55/150 (36.67%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            KGTTT+  + KEGV++AAD+RAS+G  I +++V KI +I+ ++    AG   D     R L  +  L++    +++SV   + LLANIL   +        ++ G+DE  P L+ VD  GG  +    + GSG  +AY +LDS Y+ +MS
Sbjct:    9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEK-PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMS 157          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.688e-17
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 663
            KGTTT+  +  +GV++AAD RAS+G  + +++V KI +I+ ++    AG   D     R L  + +L+   + +++SV   + LLAN+L   R +      ++ G+DE  P LY VD  GG  +    + GSG  +AY VLDS Y+ D+
Sbjct:    9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDL 156          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 52/173 (30.06%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGG 738
            GTTT+    K+ V++A + R +M  +I  ++ KK+ +I+ Y   T+AG   D Q   R +  +  L+ L  +  + +   + LL+N+L   + M   V  ++ G D T P ++ +D+ GG ++    S GSGSP+ YGVL+S Y   M+              A  +++ SGG
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGG 179          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 53/150 (35.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            KGTTT+  + K+GV++AAD RAS+G  I +++V KI +I+ ++    AG   D     R L  + +L+   + +++SV   + LLANI+   +        ++ G+DE  P LY VD  GG  +    + GSG  +AY +LDS YK +++
Sbjct:    9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLT 157          
The following BLAST results are available for this feature:
BLAST of DY305923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSMB_METTE3.312e-2433.33Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METTH5.649e-2440.27Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_ARCFU3.100e-2235.23Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA2.456e-1933.33Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PB6LB_SALSA1.348e-1733.33Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA1.348e-1733.33Proteasome subunit beta type-6-A like protein OS=S... [more]
PSMB_PYRFU5.121e-1736.67Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRAB6.688e-1735.57Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_THEAC8.735e-1730.06Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSMB_PYRHO8.735e-1735.33Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305923 ID=DY305923; Name=DY305923; organism=Citrus sinensis; type=EST; length=1275bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAAAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTC
TCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTA
CAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAAAATAGCTA
TTTATCCTGCAACATTCAAAAATGCACCCAGTGGTGGTGGTTGCAACCGT
TTATTATGTGGAACCAAAGGAATGGAAAAACCTTCGGGTATGTAATGTTT
GAGAACTTCCTACAATTATTATCAACCACCCCCNCGGGGTGAGANTACGA
AATGGCTGAGATAACAGGGGGCATATTTAATCTTGTGTAANATGGCCACA
GTTGTTAGAATTTCCTCAAATTTAGAAAAATACAGGGAGGAAGTGCTGGG
AAATTGCCTGCGAANTGTAGAGAAGGTCTTGTGTGAGTGCTTCGGGGTGG
ATACTCGTTGTAATCACTTGAGAAGTGTAATGCGCTGGGTGGTGAGGANG
GGGGGTTCCTGGTGTGAGGTGGAGTGGTCTGGGAGGTTGGGTTGGGGTGT
TCCACATTTGGGATGGGAGTGAGGCAATGGGTATGATGGGGAGGATGTTA
GCGAGGGTAGGAGGAAGAGGGAAGGAGCGGGTGGGGGATGAGGTGAGAGG
TTATATAGTTAGATTGATGTATGAAATTTACGCTTGCAGAGTAGGCACCG
CNGAGGTCATGCATCAATACGTATC
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