DY305923

Overview
NameDY305923
Unique NameDY305923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.176e-15
Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  208 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            K  KGTTT+     +GV++AAD RAS G +++++ V+K++ I   +  T AG  AD QF +  L      + +     IS+ G +  LAN+L + +     V  +I G+D+  P L+ +D  G   +    + GSGSP A GVL+  Y   M+            + A  +++ +G G       +KG E+
Sbjct:   10 KILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ-PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKGHEE 199          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.068e-14
Identity = 58/188 (30.85%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H +       V  A+ L+ NI Y Y+   LS   ++AGWD+ G G  YV +  G L    F+V GSGS Y YG +D+ Y+  MS              A  ++  SGG    +    KG E+
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYK-EDLSAHLIVAGWDKRGGGQVYV-TLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAEE 203          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.068e-14
Identity = 55/175 (31.43%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  172 FDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            FD +Q++           KAT   + GTT +   F  GV++AAD+R++ G  ++ ++  K+  I+P +    AG AAD +   + +G    LH L   R+  V  A ++L   L+ Y+G  +    ++AG D TG  L+ + + G    G   S+GSGS  A  VL+S +K D++
Sbjct:    6 FDNYQRNNFLAENSHTQPKAT---STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLT 176          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.068e-14
Identity = 56/188 (29.79%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            GTT  A  +K+GV++AADSR +MG YI+++   K+ ++   +    +G AAD Q     L     ++ +      SV  A+ L + + Y  + M LS G ++AG+DE   G  Y    GG L     ++ GSGS + YG  D+ ++ +M+              A  ++  SGG    ++    GME+
Sbjct:   24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMER 210          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.395e-14
Identity = 58/188 (30.85%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H +       V  A+ L+ NI Y Y+   LS   ++AGWD+ G G  YV +  G L    F+V GSGS Y YG +D+ Y+  MS              A  ++  SGG    +    KG E+
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDKRGGGQVYV-TLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAEE 203          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.379e-14
Identity = 63/233 (27.04%), Postives = 107/233 (45.92%), Query Frame = 1
Query:  169 DFDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGT------KGMEKPSGM*CLRTSYNY 819
            DF+ +Q++           KAT   + GTT +  I K+ +++ AD+RA+ G  I+ ++ KK+  I+P +    AG AAD +F    +     LH L   RK  V  A  +L   L+ Y+G  +    ++ G+D  GP L+ + + G   K    ++GSGS  A  VL++ Y+ D+                 F +  SG  C+ ++         +G  KP+     ++ Y Y
Sbjct:   11 DFEYYQRNLLLQEKGFPTPKAT---STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQG-HIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSKYTY 239          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 54/173 (31.21%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGG 738
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++ ++   ++G AAD Q        +  LH +  +    V  A+ ++ NI Y YR   LS   M+AGWD+   G  Y    G  ++      GSGS Y YG +D+ YK  MS              A  ++  SGG
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYR-EDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGG 191          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 51/198 (25.76%), Postives = 93/198 (46.97%), Query Frame = 1
Query:  190 DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            D      H+ GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H + + +  +V  ++ L+  + Y+ + M L  G ++ GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K +M+              A  ++  SGG    ++  ++G+ +
Sbjct:    2 DLNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNM-LQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEGVTR 198          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 56/188 (29.79%), Postives = 85/188 (45.21%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+ ++    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+              A  ++  SGG          G+E+
Sbjct:   33 GTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVER 219          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 5.299e-14
Identity = 56/188 (29.79%), Postives = 85/188 (45.21%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEK 780
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+ ++    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+              A  ++  SGG          G+E+
Sbjct:   33 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVER 219          
The following BLAST results are available for this feature:
BLAST of DY305923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSMB_SULSO8.176e-1530.37Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB9_ONCMY1.068e-1430.85Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB7_YEAST1.068e-1431.43Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB6_SCHPO1.068e-1429.79Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB9_SALSA1.395e-1430.85Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB7_SCHPO2.379e-1427.04Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB9_BOVIN3.107e-1431.21Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB6_ARATH3.107e-1425.76Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_MOUSE4.058e-1429.79Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_RAT5.299e-1429.79Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305923 ID=DY305923; Name=DY305923; organism=Citrus sinensis; type=EST; length=1275bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAAAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTC
TCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTA
CAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAAAATAGCTA
TTTATCCTGCAACATTCAAAAATGCACCCAGTGGTGGTGGTTGCAACCGT
TTATTATGTGGAACCAAAGGAATGGAAAAACCTTCGGGTATGTAATGTTT
GAGAACTTCCTACAATTATTATCAACCACCCCCNCGGGGTGAGANTACGA
AATGGCTGAGATAACAGGGGGCATATTTAATCTTGTGTAANATGGCCACA
GTTGTTAGAATTTCCTCAAATTTAGAAAAATACAGGGAGGAAGTGCTGGG
AAATTGCCTGCGAANTGTAGAGAAGGTCTTGTGTGAGTGCTTCGGGGTGG
ATACTCGTTGTAATCACTTGAGAAGTGTAATGCGCTGGGTGGTGAGGANG
GGGGGTTCCTGGTGTGAGGTGGAGTGGTCTGGGAGGTTGGGTTGGGGTGT
TCCACATTTGGGATGGGAGTGAGGCAATGGGTATGATGGGGAGGATGTTA
GCGAGGGTAGGAGGAAGAGGGAAGGAGCGGGTGGGGGATGAGGTGAGAGG
TTATATAGTTAGATTGATGTATGAAATTTACGCTTGCAGAGTAGGCACCG
CNGAGGTCATGCATCAATACGTATC
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