DY305923

Overview
NameDY305923
Unique NameDY305923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.908e-12
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 1
Query:  187 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGG 738
            ++T     H+ GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L   + Y+ +   L  G +I GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K  M+              A  ++  SGG
Sbjct:    2 ENTDVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDR-LQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGG 185          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.908e-12
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  196 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            +  L    GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R+  V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M+
Sbjct:   31 RVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMT 186          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.798e-12
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  211 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            HA+  GTT    +F++GV++ AD+RA+    ++ +  +KI  I P +    AG AAD +   R       LH L+  R+  V   +++L   L+ Y+G  +    ++ G D TGP LY V   G   +    ++GSG   A  VL+  ++ +M+
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGY-VGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMT 186          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.960e-12
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  211 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 666
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R+  V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M+
Sbjct:   34 HARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMT 186          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.105e-11
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  208 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMS 666
            K   GTT +A  + +GV++ ADSR SMG Y+SS+   K+ +I   +    +G +AD Q     L +   ++         V  A+ L + I+  Y    L  G ++AG+D+  P ++ + S GG L    +++ GSGS + YG  D  ++  MS
Sbjct:    6 KEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKII--YENPSLLAGLIVAGYDDK-PRVFNI-SLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMS 155          
The following BLAST results are available for this feature:
BLAST of DY305923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB6_TOBAC2.908e-1227.57Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB10_RAT2.908e-1229.30Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_BOVIN3.798e-1230.52Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB10_MOUSE4.960e-1230.52Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB6_ENCCU1.105e-1131.17Probable proteasome subunit beta type-6 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305923 ID=DY305923; Name=DY305923; organism=Citrus sinensis; type=EST; length=1275bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAAAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTC
TCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTA
CAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAAAATAGCTA
TTTATCCTGCAACATTCAAAAATGCACCCAGTGGTGGTGGTTGCAACCGT
TTATTATGTGGAACCAAAGGAATGGAAAAACCTTCGGGTATGTAATGTTT
GAGAACTTCCTACAATTATTATCAACCACCCCCNCGGGGTGAGANTACGA
AATGGCTGAGATAACAGGGGGCATATTTAATCTTGTGTAANATGGCCACA
GTTGTTAGAATTTCCTCAAATTTAGAAAAATACAGGGAGGAAGTGCTGGG
AAATTGCCTGCGAANTGTAGAGAAGGTCTTGTGTGAGTGCTTCGGGGTGG
ATACTCGTTGTAATCACTTGAGAAGTGTAATGCGCTGGGTGGTGAGGANG
GGGGGTTCCTGGTGTGAGGTGGAGTGGTCTGGGAGGTTGGGTTGGGGTGT
TCCACATTTGGGATGGGAGTGAGGCAATGGGTATGATGGGGAGGATGTTA
GCGAGGGTAGGAGGAAGAGGGAAGGAGCGGGTGGGGGATGAGGTGAGAGG
TTATATAGTTAGATTGATGTATGAAATTTACGCTTGCAGAGTAGGCACCG
CNGAGGTCATGCATCAATACGTATC
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