DY305918

Overview
NameDY305918
Unique NameDY305918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1282
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.112e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  292 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 582
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +S ++ SGS D  VR+WD  T +C+ +   +  P++++ F+ +G L+  +S
Sbjct:   94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190          
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.478e-11
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  292 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 582
            A+S D + + S   D T+KI D ++G  +K L GH+   + V F+P +S ++ SGS D  VR+WD NT EC      +  P+  + F+ +G L+   S
Sbjct:   95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGS 191          
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.478e-11
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  274 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEG-ELLAVASGHKLYIWPYNNKE 621
            R   A   S DGR +AS   D T+K+ D  TG  + VL GHRR  W   F+P  S  LASGS D  +R+W+ +T +C+ + + +   I  + + ++G ++++ A+   + +W  ++ E
Sbjct:  466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPF-SRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582          
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.209e-11
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  295 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSCDFYRPIASIAFHAEGELLAVASGHK-LYIW 603
            F P G  LAS  GD  VKI D +   C+   + H++  W VRFH L  E++ASGSLDH VRLWD    +C +        +  +A+      LA AS  K + +W
Sbjct:  376 FHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHL-GEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVW 479          
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.416e-11
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  292 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 582
            A+S D R L S   D T+K+ +  TG  LK L GH    +   F+P +S ++ SGS D  VR+WD  T +C+ +   +  P++++ F+ +G L+  +S
Sbjct:  121 AWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 217          
BLAST of DY305918 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.416e-11
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  259 LVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVAS-GHKLYIWP 606
            L  P  + ++ AFSPDG  L   HG D TV + D  +G  L    GH  T WV  V F P    +LASGS D  +RLWD    E   + + +  P+ S+AFH EG  LA AS    + IWP
Sbjct:  623 LQAPAENVVSLAFSPDGSMLV--HGSDSTVHLWDVASGEALHTFEGH--TDWVRAVAFSP-DGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIWP 738          
The following BLAST results are available for this feature:
BLAST of DY305918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
WDR5_BOVIN1.112e-1135.71WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR5_DICDI2.478e-1135.71WD repeat-containing protein 5 homolog OS=Dictyost... [more]
UTP13_SCHPO2.478e-1133.05Probable U3 small nucleolar RNA-associated protein... [more]
PF20_CHLRE7.209e-1139.05Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]
WDS_DROME9.416e-1134.69Protein will die slowly OS=Drosophila melanogaster... [more]
PKWA_THECU9.416e-1141.32Probable serine/threonine-protein kinase pkwA OS=T... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DE09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305918 ID=DY305918; Name=DY305918; organism=Citrus sinensis; type=EST; length=1282bp
GCCTGGCCTCACGATCAAAATTCCCTCCGATCACAACCGTCCAATCATCT
CCGCCGCAGGGCTAGAAATGTTTCGCGTTTGTTAGCACACAGAGAGATTT
CGCCCAAAACAAAATATGTACCTAAAAGGCAGTGGGTGGATGCTTCTAAA
TTGAAGACTTGTGGGCCCAGCGACAGTTCAGTGAGAGATGCAAAACGGGG
TCTTGTTTCATGGGTTGAGGCAGAATCATTACGGCATTTATCAGCAAAGT
ATTGTCCTTTGGTGCCTCCTCCAAGATCCACTATTGCGGCAGCATTTAGT
CCTGATGGAAGAACACTTGCATCAACACATGGTGACCACACTGTAAAGAT
AATCGATTGCCAAACTGGAAACTGCTTGAAGGTGTTGAGTGGACATCGGA
GGACACCATGGGTGGTTAGGTTTCACCCATTACGTTCAGAAATTCTTGCA
AGTGGGAGCTTGGATCATGAAGTTCGCTTGTGGGATGCAAACACATCGGA
GTGTATAGGATCATGTGATTTCTATCGTCCCATTGCTTCCATTGCTTTCC
ATGCTGAAGGAGAACTCCTTGCTGTTGCATCGGGTCACAAGTTGTACATA
TGGCCCTACAACAACAAAGAGGAAGCTTCCTCGCCAATAATTGTGCTGAA
GACTACGCGCTCACTTCGAGCTGTACATTTTCACCCTATGCTGCTCCATT
GGTTTGGCTGCTGGAGTTCATGATCTTGACTCTTCGGAATCGTCAATGGC
ACCAAGCGACTTCTCTGGTTTATTGCGAATATCTCCCTCCAGCTGTCTTG
GTGGGAAAAAGCTAAGTCCGGGGGACATACATACCTTGGCGGGCTGAAAT
TCCCTCTTAATGCCTCCATGGCTTTCCCAGGATGGGGACTTCCGTTTGCN
AGAAAAGAAATAGGAGAAAAATTTCGCGCCACGCGGTGAAGGCGGAGCCA
ATAAAGGGAAATTGCAGATTGAAGGCATCTCGTCGCACGCACAGTCACTG
ATCGGGTATAACGAGGGAGAGAACGGTGATAGAGGAGGTGCCCTACCAAT
GGGTGGAATCAGCGAGGGGATATCTCNACTGGAAACAGAAGCGTATTGTT
ATAATACGACGGAGTCTCCCTACGGCGNGAATAGTGTGNCGGCTACGTCC
AGGGATTCTGGTAGACAATAAATGGGATAAGAAATTCACGATGGGGTAAC
GACTTGATCTCCTTGCACGCGCGGTATCATGGGTGTGTATCTGCGGGGGA
TTACTGACTAGGTNTTGTATTATAATACGNTG
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