EY702684

Overview
NameEY702684
Unique NameEY702684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_HALOH (ATP synthase gamma chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  259 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT----------PTVDAKKN---VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            ++ R+ S+KN QKITKAMKMVAA+KL+  Q+KAEN+R  ++   ++L D           P +  K+N   + V I++D+GLCG  N+   ++   + KL    D+ N ++ +G K +
Sbjct:    7 IKRRINSIKNTQKITKAMKMVAAAKLKKAQLKAENARPFFEKTRSILIDVARRTRQKDIHPLLREKENNRSLFVMITADRGLCGAYNA---RVIDRVKKLTEKEDEVN-FLAVGRKGR 120          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  A+N+R   Q   +++ +                T   +++++V  +SD+GL GG NS  V+ ++      S   K+ + + +G KA+
Sbjct:    3 SLKEMRNRIGSVKATQKITKAMQMVAAAKLRKAQDAAQNARPYAQRMASVIANLAAGVSGDGAPKLLAGTGSDRRHLVVVATSDRGLAGGFNSAIVRAARERINALSAEGKDVRVITIGRKAR 125          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 45/123 (36.59%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  235 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  ++    S  L++     + +    D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + I
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGI 140          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  235 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + I
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGI 140          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 42/120 (35.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  259 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +
Sbjct:    7 LKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGR 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_RHORU (ATP synthase gamma chain OS=Rhodospirillum rubrum GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGR 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_RHORT (ATP synthase gamma chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGR 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  235 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + I
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGI 140          
The following BLAST results are available for this feature:
BLAST of EY702684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATPG_HALOH1.994e-1136.44ATP synthase gamma chain OS=Halothermothrix orenii... [more]
ATPG_PHEZH3.402e-1134.15ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_MACFA4.443e-1136.59ATP synthase subunit gamma, mitochondrial OS=Macac... [more]
ATPG_HUMAN7.579e-1137.82ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_DINSH7.579e-1135.00ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_RHORU9.898e-1135.48ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_RHORT9.898e-1135.48ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_PONAB9.898e-1137.82ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-A05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702684 ID=EY702684; Name=EY702684; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGTCGACACCTGAGCTCGCACGACCCAAACAGAACATAAAG
CTTTGGATCTGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGAC
GACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGG
CGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAATCAGATC
CCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAA
CTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATT
ACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGT
TAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTG
GTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCT
TCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAG
CAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACG
TCATCTTGGGAGAGAAGGCAAAGGCAATTAGTACGTGACTCAAAGAAAGA
TATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCC
AGGTTTCCGTTCTTGCAGATGNATATCTTAAGAATGTAGAATTTGATGCT
TTGAGGATTATCTATAGCAAAGTCCATTCCCGTGGTCTCCTTTCTGCCGA
CAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGAGCCGAAATCT
GGGGGAAGCTTGGTGAGCTAGACTCCTATGAAATGAAGGCNGTGGAACAA
AGGGGGAATACTTCAAATCTGCCTGAGTCCAATTCTCTGGGTCATGGTCA
TGCGGG
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