DY305882

Overview
NameDY305882
Unique NameDY305882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.653e-55
Identity = 113/204 (55.39%), Postives = 143/204 (70.10%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 614
            G+FD++++  LPNMV+MA +DEAEL+HMVATAA  D+ P  FR+PRG G+G  LP    G  L+IG+GRI+ EG  VA+L  G+ + +   AA  L S  ISVTVADARF KPLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG  LK RSMVLPD ++DH  P     ++GL ++ I A VL+ LGR  EA
Sbjct:  435 GSFDVSYLGILPNMVIMAAADEAELVHMVATAAAYDEGPIAFRYPRGEGVGIELP--QIGEILDIGRGRIVREGTTVALLSLGTRLAEASKAAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 103/199 (51.76%), Postives = 142/199 (71.36%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F+ CLPNMV+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G  LEIGKGRI+ EG+++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLD +L+ +LA +HEIL+T+EEGS+GGFGSHV   L   G+LDG +++RS+VLPD ++DH +P      +GL ++ I   V   LG+
Sbjct:  435 GSFDNAFLGCLPNMVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGIALEIGKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 110/199 (55.28%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G  LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA+ L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I   V + LGR
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGQLLEIGKGRIVREGTKVALLSFGTRLQECLAAADELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFASHVLQFLATDGLLDRGLKVRALTLPDTYQDHGKPDAMYAEAGLDRTGIVHAVFAALGR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 110/199 (55.28%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TV DARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVVDARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 110/199 (55.28%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD   K+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 110/199 (55.28%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD   K+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.138e-55
Identity = 110/199 (55.28%), Postives = 140/199 (70.35%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R+++LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain S19) GN=dxs PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.138e-55
Identity = 110/199 (55.28%), Postives = 140/199 (70.35%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R+++LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.138e-55
Identity = 110/198 (55.56%), Postives = 142/198 (71.72%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G++DI++++ LP  VVMA +DEAEL HMV TA  IDDRPS FRFPRG G+G  +P  ++GT LEIGKGR++ EG+RVAIL +G+ +++   AA  L  + I+ T+ADARF KPLD  LI QLA  HE LITVEEG+VGGFGSHV H L  + + D  +K RSMVLPD +ID  SP D    +G+++  I A VL+ LG
Sbjct:  436 GSYDISYLANLPGFVVMAAADEAELRHMVRTALEIDDRPSAFRFPRGEGMGVDMP--DRGTALEIGKGRMISEGNRVAILNFGTRLKEVQEAAETLSQRGITPTIADARFAKPLDEALILQLARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKDMYAVAGMNAEDIVAKVLTTLG 631          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.813e-54
Identity = 109/203 (53.69%), Postives = 143/203 (70.44%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 614
            G+FDI ++  LP MV+MA +DE EL  MV TAA+IDD PS FR+PRGNG G  +P   +  PLEIGKGRI+ EG R+AIL  G+ +++ + AA+ L +Q  S TVADARF KPLD DLI +LA EHE+LITVEEG+VGGFG+ V H L   G LD  L++R++ LPD + D  +P D  E +GL++RHI+A  L  +G+   A
Sbjct:  432 GSFDIGYLGALPGMVLMAAADELELSRMVKTAALIDDGPSAFRYPRGNGTGIEIPDQIE--PLEIGKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGKDDAA 632          
The following BLAST results are available for this feature:
BLAST of DY305882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BEII93.653e-5555.391-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_RHOPB6.231e-5551.761-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_OCHA46.231e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_BRUO26.231e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUME6.231e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB6.231e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUAB8.138e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUA18.138e-5555.281-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS1_JANSC8.138e-5555.561-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_MARMM1.813e-5453.691-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305882 ID=DY305882; Name=DY305882; organism=Citrus sinensis; type=EST; length=883bp
ATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTG
GTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGC
AGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACG
GAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATT
GGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTA
TGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCC
AAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGAT
ACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGT
GGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAA
CCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTT
CCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATC
AGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGA
GGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAACAACA
TCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTNGGGGGTGTTATACA
CTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAACCAT
GAAGCAATACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTGTTT
CTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGATCTT
CCCTGTAGATTAAAAAAAAAAAAAAAAACTCCA
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