DY305882

Overview
NameDY305882
Unique NameDY305882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.813e-54
Identity = 106/199 (53.27%), Postives = 142/199 (71.36%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG G+G  LP   +G  LEIGKGR+L EG RVA++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+ VEEG++GGFG+H+  FL   G+L+  LK+R++  PD Y++HGSP   L   GL +  I  TV + LGR
Sbjct:  434 GSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGVGMDLP--QRGELLEIGKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.368e-54
Identity = 101/199 (50.75%), Postives = 143/199 (71.86%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  ++ CLPNMV+MA +DEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P      +GL ++ I   V  +LG+
Sbjct:  435 GSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.368e-54
Identity = 101/199 (50.75%), Postives = 143/199 (71.86%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  ++ CLPNMV+MA +DEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P      +GL ++ I   V  +LG+
Sbjct:  435 GSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.368e-54
Identity = 109/199 (54.77%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+L  EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R+++LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLVREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.092e-54
Identity = 104/200 (52.00%), Postives = 141/200 (70.50%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPL-KLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F+ CLPNMV+MA +DEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G ++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLD DL  +LA EH++LIT+EEGS+GGFGSHV   L  +G LDG L ++RSM+LPD ++DH +P      +GL ++ I A V   LG+
Sbjct:  459 GSFDNAFLGCLPNMVIMAAADEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLALKLAREHDVLITIEEGSIGGFGSHVMQTLMDNGALDGGLVRVRSMILPDEFLDHDTPTAMYARAGLDAKGIVAKVFEALGK 656          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.039e-54
Identity = 104/199 (52.26%), Postives = 140/199 (70.35%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            GAFD+ F++ LPNM VMA +DEAEL+HM+ATA   D+ P  FRFPRG G+G  +P   +GT LE G+GR++ EG  VAIL +G+ + + + AA +L+++ +SVTVADARF +PLDT LI QL   H  L+TVE+G++GGFG+HV H+L  SG  DG L LR M LPDR+I+  SP D   ++GL +  I+AT    L R
Sbjct:  437 GAFDVGFITSLPNMTVMAAADEAELIHMIATAVAFDEGPIAFRFPRGEGVGVEMP--ERGTVLEPGRGRVVREGTDVAILSFGAHLHEALQAAKLLEAEGVSVTVADARFSRPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALAR 633          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.275e-54
Identity = 103/199 (51.76%), Postives = 141/199 (70.85%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD TF++ LP MVVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ + +C+ AA  L +  +S TVADARF KPLD DLIRQLA  HE+L+T+EEGSVGGFG+HV HF+  +G+LD   K+R++ LPD++++   P      +GL    I +TV + LG+
Sbjct:  434 GSFDTTFLATLPGMVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVEMPA--RGEILQIGKGRIIKEGTKVALLSFGTRLAECLAAAEDLDAAGLSTTVADARFAKPLDLDLIRQLAAHHEVLVTIEEGSVGGFGAHVLHFMASAGLLDHGPKVRTLTLPDQWVEQAKPETMYANAGLDRAGIVSTVFNALGQ 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.997e-54
Identity = 108/198 (54.55%), Postives = 140/198 (70.71%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FDI +++ LP MVVMA +DEAEL+HMVATAA  DD P  FR+PRG G+G  +P    G  LEIGKGR++ +G RVA+L +G+ + +   AA  L ++ I+ T+ADARF KPLD DLI  LA++HE LIT+EEG+VGGFGSHV   L   G+ D  LK RSMVLPD +ID  SPAD    +G+++  I A VL +LG
Sbjct:  438 GSFDIAYLANLPGMVVMAAADEAELVHMVATAAAHDDGPIAFRYPRGEGVGVEMP--ELGKVLEIGKGRMIQKGARVALLSFGTRLTEVQKAAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.175e-53
Identity = 107/199 (53.77%), Postives = 136/199 (68.34%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA +DEAEL HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE++ITVEEGS+GGFGSHV HFL   G+LD  LKLRS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  434 GSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDGGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.948e-53
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FDI FM+ LP MVVMA +DEAEL HMVATAA  D  P  FR+PRG G G  +P   +   LEIGKGRI+ EG RVA+L +G+ + +   AA  L ++ I+ TVADARF KPLD D+I  LA +HE LIT+EEG+VGGFGSHV   L+   + D  LK RSMVLPD +ID  SP D  + + +++ HI A VL +LG
Sbjct:  438 GSFDIAFMANLPGMVVMAAADEAELKHMVATAAAYDAGPIAFRYPRGEGEGVEMPEQPE--VLEIGKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLDVLG 633          
The following BLAST results are available for this feature:
BLAST of DY305882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BARQU1.813e-5453.271-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHOPT2.368e-5450.751-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA2.368e-5450.751-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRUA22.368e-5454.771-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_NITWN3.092e-5452.001-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS1_RHOS44.039e-5452.261-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_AGRT55.275e-5451.761-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_SILPO8.997e-5454.551-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_RHIL31.175e-5353.771-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_SILST9.948e-5354.551-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305882 ID=DY305882; Name=DY305882; organism=Citrus sinensis; type=EST; length=883bp
ATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTG
GTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGC
AGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACG
GAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATT
GGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTA
TGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCC
AAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGAT
ACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGT
GGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAA
CCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTT
CCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATC
AGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGA
GGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAACAACA
TCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTNGGGGGTGTTATACA
CTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAACCAT
GAAGCAATACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTGTTT
CTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGATCTT
CCCTGTAGATTAAAAAAAAAAAAAAAAACTCCA
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