DY305882

Overview
NameDY305882
Unique NameDY305882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.948e-53
Identity = 104/199 (52.26%), Postives = 137/199 (68.84%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD T+++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  LP   +G  L IGKGRI+ +G++VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE+LIT+EEG+VGGF SHV  FL   G++DG LK+R MV+PD +++   P      +GL    I +TV   LG+
Sbjct:  439 GSFDTTYLATLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVELP--ERGEILAIGKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKPEAMYARAGLDRAGIVSTVFKALGQ 635          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.948e-53
Identity = 104/198 (52.53%), Postives = 138/198 (69.70%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FD+ F+S LP +VVMA +DEAEL+HMVATAA  D+ P  FR+PRG+G+G  +P   KG PL+IG+GR++ EG R+A+L +G+ + +  +AA  L ++ IS TVADARF KPLD DLI QLA  HE LIT+EEG++GGFGSHV   L  +G+ D   + RSMVLPD +IDH S       +GL++  I    L  LG
Sbjct:  434 GSFDVAFLSNLPGIVVMAAADEAELVHMVATAAAHDEGPIAFRYPRGDGVGVEMPV--KGVPLQIGRGRVVSEGTRIALLSFGTRLAEVQVAAEALAARGISPTVADARFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.299e-52
Identity = 103/200 (51.50%), Postives = 137/200 (68.50%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G +VA+L  G+ + +C  AA+ L +  +S T+ADARF KPLD DL+ +LA +H++LIT+EEGS+GGFGSHV   L   G LD G +++R+MVLPD ++DH +P       GL  R I A V   LG+
Sbjct:  461 GSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.299e-52
Identity = 105/199 (52.76%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  +P   +G  L IGKGRI+ EG +VA+L +G+ + +C++AA  L +  +  TVADARF KPLD DLIRQLA  H +LITVEEG+VGGFGS V H L   G+LD  LK+RS+VLPD ++D   P    E++GL ++ I +TV + L R
Sbjct:  434 GSFDTGFLASLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVQMP--ERGEILPIGKGRIIKEGSKVALLSFGTRLAECLVAAEDLDAAGLPTTVADARFAKPLDLDLIRQLARHHAVLITVEEGAVGGFGSQVLHMLANEGLLDHGLKVRSLVLPDLWMDQAKPDVMYEKAGLDAKGIVSTVFTALSR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.100e-51
Identity = 105/199 (52.76%), Postives = 136/199 (68.34%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD  F++ LP  VVMA +DEAEL HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L++  +S TVADARF KPLD DLIRQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  434 GSFDTAFLATLPGFVVMAAADEAELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.450e-51
Identity = 100/197 (50.76%), Postives = 140/197 (71.07%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            G+FDIT++S LPN +VMAPSDEAEL+ M  T+  I+++P   R+PRGNGIG  LP  ++   +EIGKGR++ EG +V IL  G+ +++C +AA  LK++ I  T+ DARF KPLD +LI + A EHE +ITVEEGS+GGFGSHV + L+  GI D  LK R+M+LPD +I+  SP    + +GL++  IS  +L +L
Sbjct:  432 GSFDITYLSTLPNFIVMAPSDEAELVKMTNTSMTINNKPCAIRYPRGNGIGVELPSIDEN--IEIGKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL 626          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.450e-51
Identity = 100/197 (50.76%), Postives = 141/197 (71.57%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            G+FD+T+++ LPN+VVMA +DEAEL+HM  TAA+ D  P  FR+PRGNG+G  LP   +   LEIGKGRI+ +G +VA+L  G+ + + + AA+ L ++ +S TVAD RF KPLD  LIRQL   H++++TVEEGS+GG G+HV    +  G++DG LK+R+M LPD + DH +P  Q +E+GL++ HI  TVL  L
Sbjct:  434 GSFDVTYLATLPNLVVMAAADEAELVHMTYTAALHDSGPIAFRYPRGNGVGVPLPEVPER--LEIGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.179e-51
Identity = 104/197 (52.79%), Postives = 130/197 (65.99%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            GAFD+  ++CLP   VMAP+DEAEL HM+ATA   D  P  FRFPRG G+G   P   KG  L IGKGR++ EG  +A L  G+ +  C+  A  L S  IS TVADARF KP+D +LI  LA  H  L+ VEEGSVGGFGS V  FL+  G++DG LK+R++ LPD YIDH +PA QL E+GL +  I    L+L+
Sbjct:  433 GAFDLAMLTCLPGFTVMAPADEAELTHMIATAVGHDAGPIAFRFPRGEGVGVERP--EKGERLPIGKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGLDADGIYKRALALV 627          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.129e-51
Identity = 104/198 (52.53%), Postives = 133/198 (67.17%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FD+ FM  LP MVVM P+DEAEL   +ATA  IDDRPS FR+PRG G+G  +P      PLEIG+GRI+ EG  VAIL +G+ + + + AA+ML ++ +S TVADARF KPLD DL+ +LA EHE LITVEEG+VGGFG  V H L   G LD  LK+R++ LPD + D   P     ++GL +  I    L+ LG
Sbjct:  432 GSFDVGFMGQLPGMVVMGPADEAELARAIATAVAIDDRPSAFRYPRGEGVGVEIPA--LADPLEIGRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.311e-51
Identity = 102/198 (51.52%), Postives = 135/198 (68.18%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G FD+ FM  LP MV+MA +DE EL HMV+TA  IDDRPS FR+PRG G+G  +P  +   PLEIGKGRI+ EG  VAI+  G+ + +C+ AA++L ++ +S TVADARF KPLD D++ +LA EHE +ITVEEG++GGFG+ V   L   G LD  LK+R++VLPD + D   P     ++GL +  I    LS LG
Sbjct:  432 GTFDLGFMGALPGMVLMAAADEVELAHMVSTAVAIDDRPSAFRYPRGEGLGLTIP--DLAAPLEIGKGRIVREGTSVAIVSLGTRLAECLKAADLLAARGLSATVADARFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
The following BLAST results are available for this feature:
BLAST of DY305882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHIME9.948e-5352.261-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS2_RHOS49.948e-5352.531-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_NITHX1.299e-5251.501-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_AGRVS1.299e-5252.761-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHIE61.100e-5152.761-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_PELUB2.450e-5150.761-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS_NOVAD2.450e-5150.761-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_AZOC54.179e-5152.791-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_PHEZH7.129e-5152.531-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_CAUSK9.311e-5151.521-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305882 ID=DY305882; Name=DY305882; organism=Citrus sinensis; type=EST; length=883bp
ATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTG
GTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGC
AGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACG
GAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATT
GGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTA
TGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCC
AAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGAT
ACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGT
GGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAA
CCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTT
CCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATC
AGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGA
GGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAACAACA
TCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTNGGGGGTGTTATACA
CTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAACCAT
GAAGCAATACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTGTTT
CTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGATCTT
CCCTGTAGATTAAAAAAAAAAAAAAAAACTCCA
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