DY305882

Overview
NameDY305882
Unique NameDY305882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.715e-49
Identity = 96/197 (48.73%), Postives = 137/197 (69.54%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            G+FD+T+++ LPN VVMA +DEAEL+HM  TAA  D  P  FR+PRG GIG  LP   +   LEIGKGRI+  G +VA+L  G+ +++   AA+ L+++ +S T+AD RF KPLDT+LI QL   HE+++T+EE S+GG G+HV  + +  G+ D  LK+R+M LPD +I+  +P  Q +E+GL++ HI  TVL  L
Sbjct:  434 GSFDVTYLATLPNFVVMAAADEAELVHMTYTAAEHDSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKAL 628          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.138e-48
Identity = 102/198 (51.52%), Postives = 134/198 (67.68%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  432 GSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.138e-48
Identity = 102/198 (51.52%), Postives = 134/198 (67.68%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  432 GSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.325e-48
Identity = 95/197 (48.22%), Postives = 133/197 (67.51%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGF SHV  +L   G+LDG LKLR++ +PDR+ +H +P  Q  ++G+ ++ I+  VL  L
Sbjct:  436 GVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.325e-48
Identity = 100/200 (50.00%), Postives = 134/200 (67.00%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FDI ++  LP MVVMA +DEAEL+HMVATA   +D P  FR+PRGNG G  LP    G  LEIGKGR++ EGD  VAIL  G+++  C  AA +L+++ I+ T+ADARF KPLD  LI  L   H+ LITVE+G++ GFG+ V   +   G+LD   K+R+M LPDR+ID  +PA+   ++GL +  I   V  +LGR
Sbjct:  436 GSFDIGYLGALPGMVVMAAADEAELVHMVATAGAHNDGPIAFRYPRGNGTGVPLPET--GRVLEIGKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIADARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGR 633          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.538e-45
Identity = 96/197 (48.73%), Postives = 132/197 (67.01%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 596
            G+FDIT+++ LPNMVVMA +DEAEL+HM  TAA  D  P  FR+PRGNG G  LP   +   LEIGKGR++ EG  VAIL  G+ + + + AA+ L+++ +S +V D RF KPLD +LIR+    HE+ +TVEEGS+GG G+HV    +  G++D  LKLR++ LPD + D   P  Q + +GL++  I  TVL  L
Sbjct:  434 GSFDITYLATLPNMVVMAAADEAELVHMTYTAAEHDAGPIAFRYPRGNGTGVALPAVPQ--KLEIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKAL 628          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.348e-41
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+        Q  E+GL +  I A V+S L R
Sbjct:  434 GSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.688e-41
Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+        Q  E+GL +  I A V + L R
Sbjct:  434 GSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQR 630          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.435e-37
Identity = 90/199 (45.23%), Postives = 127/199 (63.82%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 599
            GA+D++++  +P M +MAP+DE EL HM+ TA  ++ +P   R+PRG  +G  LPP      LEIG+GR L +G+  AIL  G  V   + AA +L+ Q ISV+V DARF KPLD  L++++A  H +++ VEE +V GGFGS V   L+  G LD  LK+R M +PDRYI HG+  +   E GL +  I+ T+  LLG
Sbjct:  429 GAYDLSYLRTVPGMTIMAPADENELRHMLHTAVALN-KPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVAM-HGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.486e-37
Identity = 85/197 (43.15%), Postives = 115/197 (58.38%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 593
            G +DI ++ C+PNM +MAP DEAEL  M+ T     D P   R+PRGNGIG  L       PL IGKG IL  GD + ILGYG++V   + AA  L+   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V    +   +L   + L+   +PDR +DH +P     + GL+S  I+  +L +
Sbjct:  433 GMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEG-WEPLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQV 625          
The following BLAST results are available for this feature:
BLAST of DY305882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ERYLH8.715e-4948.731-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_CAUCR1.138e-4851.521-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN1.138e-4851.521-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_RHORT4.325e-4848.221-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_ROSDO4.325e-4850.001-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS_SPHAL1.538e-4548.731-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS1_ZYMMO1.348e-4145.731-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS2_ZYMMO6.688e-4145.231-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS_MAGSM3.435e-3745.231-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_CYAP84.486e-3743.151-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305882 ID=DY305882; Name=DY305882; organism=Citrus sinensis; type=EST; length=883bp
ATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTG
GTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGC
AGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACG
GAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATT
GGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTA
TGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCC
AAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGAT
ACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGT
GGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAA
CCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTT
CCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATC
AGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGA
GGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAACAACA
TCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTNGGGGGTGTTATACA
CTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAACCAT
GAAGCAATACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTGTTT
CTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGATCTT
CCCTGTAGATTAAAAAAAAAAAAAAAAACTCCA
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