DY305882

Overview
NameDY305882
Unique NameDY305882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.859e-37
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L +     TVAD RF KPLD  LIRQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I   +   L +
Sbjct:  433 GAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEALNA-----TVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 88/200 (44.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L +     TVAD RF KPLD  L+RQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I   +   L +
Sbjct:  433 GAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEALNA-----TVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 85/207 (41.06%), Postives = 122/207 (58.94%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 623
            G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L       PLEIGKG +L  G+ + ++ YGS+V   +  A +LK   +S  V +ARF KPLDT+LI  LA +   ++T+EEG  +GGFGS V   L  + IL   L+L    +PD  ++H SP +   + GL+   ++ T++   G P+ A ++
Sbjct:  433 GMYDIAYLRCLPNMVLMAPKDEAELQRMIVTGINYTDGPIALRYPRGNGYGVALMEEG-WEPLEIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLRLG---VPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRATVV 635          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.226e-36
Identity = 86/195 (44.10%), Postives = 118/195 (60.51%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 587
            G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L  + ++   + ++ + +PD  ++H +P +   E GL+SR I+  VL
Sbjct:  433 GMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEYTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDADVV---VPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.798e-36
Identity = 86/195 (44.10%), Postives = 118/195 (60.51%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 587
            G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L  + ++   + ++ + +PD  ++H +P +   E GL+SR I+  VL
Sbjct:  433 GMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEHTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDADVV---VPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.960e-36
Identity = 84/207 (40.58%), Postives = 119/207 (57.49%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 623
            G +DI ++ C+PN+V+MAP DEAEL  M+ T     D P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDTDLI  LA +   ++T+EEG  +GGFGS V   L    +L   + ++   +PD+ +DH  P +   + GL+S  I+  VL    + +E  +I
Sbjct:  432 GMYDIAYLRCIPNLVIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQEPSVI 634          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.478e-36
Identity = 84/194 (43.30%), Postives = 115/194 (59.28%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 584
            G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG+G+G  L       PL IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V   L  +   D  + L  + +PD +++H +P + L E GL+S  I+  +
Sbjct:  438 GMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTQGPIAMRYPRGSGVGVPLAEEG-WEPLPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDA---DLAVPLLRLGVPDVWVEHATPEESLAELGLNSAGIAERI 627          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 85/200 (42.50%), Postives = 127/200 (63.50%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 602
            GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRG+G+G  +    + T LEIGKGR++ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA+EH++L+T+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I  ++   L +
Sbjct:  433 GAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTEI--EKEFTALEIGKGRVVRKGEKVAILSFGTFLPNALEAA-----KNLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKIIKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.199e-35
Identity = 85/185 (45.95%), Postives = 120/185 (64.86%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 557
            G+FD++++ C+PNM + APSDEAE   +++T     D P   R+PRG+G GA LP  +   PL IGKG     G R+A+L +G++V   +  A  L      +TVAD RF +PLD  LIR+LA+ H++L+TVEE +V GG GS V  +L  +G LD P  +R + LPDR++DHG+PA+ L E GL
Sbjct:  433 GSFDLSYLRCVPNMTIAAPSDEAECWRLLSTG-YHHDGPFAVRYPRGSGPGAALPEADLD-PLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEAL-----DLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAG-LDVP--VRHLGLPDRFVDHGTPAELLAEVGL 607          
BLAST of DY305882 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.162e-35
Identity = 87/206 (42.23%), Postives = 119/206 (57.77%), Query Frame = 3
Query:    6 GAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLK--LRSMVLPDRYIDHGSPADQLEESGLSS----RHISATVLSLLGR 602
            G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG G+G  L       P+ IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V        +LD  ++  L  + +PD +++H +P + L E GL+S      I A V +L G+
Sbjct:  438 GMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPLAEEG-WEPIPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVG-----EALLDADIRVPLLRLGVPDVWVEHATPEESLAELGLNSVGIAERIRAKVEALQGQ 637          
The following BLAST results are available for this feature:
BLAST of DY305882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_VIBVY5.859e-3744.501-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBVU9.994e-3744.001-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_THEEB9.994e-3741.061-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_ANAVT2.226e-3644.101-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP3.798e-3644.101-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_CYAP74.960e-3640.581-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_SYNJB6.478e-3643.301-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_VIBPA1.443e-3542.501-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_ALHEH4.199e-3545.951-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_SYNJA7.162e-3542.231-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305882 ID=DY305882; Name=DY305882; organism=Citrus sinensis; type=EST; length=883bp
ATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTG
GTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGC
AGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACG
GAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATT
GGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTA
TGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCC
AAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGAT
ACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGT
GGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAA
CCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTT
CCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATC
AGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGA
GGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAACAACA
TCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTNGGGGGTGTTATACA
CTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAACCAT
GAAGCAATACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTGTTT
CTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGATCTT
CCCTGTAGATTAAAAAAAAAAAAAAAAACTCCA
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