DY305873

Overview
NameDY305873
Unique NameDY305873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1286
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT13_SOLLC (Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 5.423e-83
Identity = 149/251 (59.36%), Postives = 185/251 (73.71%), Query Frame = 2
Query:    2 EGPRIGRFDRSGQSV-LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVY-PGKPG--RPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAY 742
            EGPR+GRFD  G  V +RGH+A+LVVLGT +LWFGW+GFNPGSF KIL AY   +  G W+++GR                 FG+R+L GHW+  DVCNG+LGGF AIT+GCSVVEPWAAI+CGF AA VLI  N LA K K+DDPLEAAQLHGGCGAWG+IFT LFAKE+FV + Y  GK    RP GL +GGG  L  A ++++L +  WVS TMGPLF++L KL +LRIS ++E+AG+D++ HGG+AY
Sbjct:  189 EGPRVGRFDAFGNPVKMRGHNATLVVLGTLLLWFGWFGFNPGSFNKILVAYPHMADQGNWTSVGRTAVTTTLAGSTAGIVTLFGRRLLVGHWDAMDVCNGVLGGFVAITSGCSVVEPWAAILCGFCAAWVLIGLNILALKFKFDDPLEAAQLHGGCGAWGLIFTGLFAKEEFVLQAYNSGKTQIIRPSGLILGGGWGLFGAQIVELLSIVVWVSLTMGPLFYLLQKLGILRISSDEEVAGLDISSHGGYAY 439          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT2_DICDI (Ammonium transporter 2 OS=Dictyostelium discoideum GN=amtB PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.385e-38
Identity = 91/248 (36.69%), Postives = 130/248 (52.42%), Query Frame = 2
Query:    5 GPRIGRFD-RSGQ-SVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAY 742
            GPRIGRFD  SG+   L GHS ++  LG F++W+G+YGFN GS          G   G  +   R                    +I SG ++V    N LLGG  +  A CS+++PWAA + G V + V + C+ L  K + DDPL+++ +H GCG WG +   LF+ ++ ++ V   K    YGLF GGG + L   ++ I++V  W       LF +L K  LLRI P  E+ G+D+   GG AY
Sbjct:  189 GPRIGRFDSESGKPKPLPGHSITIYTLGAFIIWYGFYGFNTGS--------TLGISGGGIAIASRSAVTMTIIACASCATTLLAIKIKSGKYDVVKSVNSLLGGLVSSAAVCSLIDPWAAFIIGCVTSFVYLGCSHLLIKLRIDDPLDSSAIHLGCGIWGALSVGLFSTQENLSLVLK-KSTNVYGLFFGGGFEQLGIQLLGIIIVMAWCFFCASILFTILKKFHLLRIEPTKELMGIDIDSAGGPAY 427          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT3_DICDI (Ammonium transporter 3 OS=Dictyostelium discoideum GN=amtC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.509e-29
Identity = 82/256 (32.03%), Postives = 126/256 (49.22%), Query Frame = 2
Query:    5 GPRIGRFDR-SGQSV-LRGHSASLVVLGTFMLWFGWYGFNPGSF-----TKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVL-IACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAYVY 748
            GPRIGRF++ SG+   L GHS  L+ LG  +LW+ WYG+  G+      +++L A           A G                   GK I +GH+++    NGL+ G  + T+ C+ +EPWAAI+ GF+  +V   +   L    + DDP+++  +H   G W +I  A FA    V       PG   G+F GGG  LL   ++ +++   W     G  FF +     LR+  + E+AG+D + HGG AY++
Sbjct:  191 GPRIGRFNQESGKPKNLPGHSVVLMSLGAMILWYSWYGYTAGASLGMTRSRVLPASRVSVVVTLSGATG------------LITVLGIGK-IFNGHYDLVKGINGLIAGLVSSTSSCAYIEPWAAIIIGFIGGIVYWFSSWALLNWLRLDDPVDSTAIHLFGGCWSLISVAFFATHGRVRNPDIILPG---GIFYGGGISLLWVQLVGMVLAILWAGFLSGIFFFTMDYFGKLRVDVDTELAGLDNSNHGGSAYIF 430          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: Y1017_SYNY3 (Putative ammonium transporter sll1017 OS=Synechocystis sp. (strain PCC 6803) GN=sll1017 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.232e-27
Identity = 78/250 (31.20%), Postives = 108/250 (43.20%), Query Frame = 2
Query:    5 GPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHW--------NVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHG 730
            GPRIGRF+ +  + L     +   LG F+LW GWYGFNPGS    + A NT +                            G   L+  W        N+    NG+LGG   ITAGC  V  W+AI  G VA ++ +   KL ++ + DD + A  +HG CG WG                     G   G+F       L+A ++  LV+  W   TM  LF+V+    +LR+ P  E  G+D+  HG
Sbjct:  215 GPRIGRFEGNKINSLGYQGITSSSLGVFILWVGWYGFNPGSQLAFVGALNTNT-------------TMLIAVNTTLSAAAGGLAALAFDWITENKRKPNLLVTLNGILGGLVGITAGCDTVSNWSAIAIGVVAGILSVLGTKLLDRLRIDDGVGAWPVHGLCGIWG---------------------GIAVGIFSTNVEHKLSAQIVGSLVIPFWAFITMFFLFYVMDLWGILRVKPSQEKVGLDIVEHG 430          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: Y108_SYNY3 (Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain PCC 6803) GN=sll0108 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.604e-26
Identity = 72/246 (29.27%), Postives = 115/246 (46.75%), Query Frame = 2
Query:    5 GPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAY 742
            GPR+G+F       + GH+    +LG  +LW GW+GFNPGS    L+A    ++    + +                   F   +  G  ++T V NG+L G   ITAGC+ V  W +++ G +A ++++      +K K DDP+ A  +H   G WG +    F  EK              GLF GGG   L   ++ IL +  + +     ++ +L +   +R+S E+EM G+D+  HG  AY
Sbjct:  267 GPRLGKFVDGRPGAIPGHNMGFAMLGCLILWIGWFGFNPGSQ---LAADQACAYIAVTTNLAASAGGLTAT---------FTSWLKDGKPDLTMVINGVLAGLVGITAGCAGVSYWGSVIIGGIAGILVVYSVAFFDKIKIDDPVGAISVHLVNGVWGTLAVGFFNMEK--------------GLFYGGGINQLIIQIVGILAIGAFTAIFSFVVWAILKQTMGIRVSGEEEMIGLDIGEHGMEAY 486          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT1_CAEEL (Putative ammonium transporter 1 OS=Caenorhabditis elegans GN=amt-1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.800e-25
Identity = 77/251 (30.68%), Postives = 111/251 (44.22%), Query Frame = 2
Query:    5 GPRIGRF----DRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPG-RPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAY 742
            GPRIG+F    D     +L GHS     LG F+L FG+  FN GS   I       SH G    +                          G W +    N  L G  A  AGC+ +EPWA I  G  A ++ +A +KL  + K DDPL+A  +H G G WG++ +++ +       +     G +  G  +      L   +I  L +  W    M P+F++L K   LR+S E E+ G+D+ +HG  AY
Sbjct:  206 GPRIGKFPDDEDDESDEIL-GHSVPFTALGGFILMFGFLAFNGGSVASI-------SHAGDGHTVALAMINTILSGAFAALIYLGVHYYQHGKWTLLLTINACLSGMVAACAGCNKMEPWACIWVGLGAGLIYLAFSKLMIRLKIDDPLDAFAVHAGGGFWGLMSSSIISHGGVAYALADAVSGAKNSGDHLTQAFAQLGWQMICALAIIAWSLGVMLPIFWILKKTGKLRVSEEVEINGLDVFKHGEMAY 448          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT1_SCHPO (Ammonium transporter 1 OS=Schizosaccharomyces pombe GN=amt1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.520e-21
Identity = 84/259 (32.43%), Postives = 110/259 (42.47%), Query Frame = 2
Query:   14 IGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQI-------LVVAGWVSATMGPLFFVLHKLK--LLRISPEDEMAGMDLTRHGGFAYVYHDDND 763
            IG+    G +  R H+   VVLGT  LWFGW+GFN GS           +  G  + +                   F K   + HW+V   C G + G  AIT G   V PWAA+V G + AV   A   L +  + DD L+    HG  G  G I TALFA +    E   G  G  Y       G  +  H IQ+       +  A +  A    L FV++ +    LR+S EDE+ G+D    G  AY Y D  D
Sbjct:  208 IGKRCDHGTTKYRPHNVPHVVLGTVFLWFGWFGFNGGSSA-------AANMRGVMAVV--VTHLAASVGGIVWCVIDFAK---NRHWSVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGALGAVFCYAATYLKKIIRVDDALDIFAEHGVGGMVGNILTALFAADYI--EALDGS-GTAY------TGGWITHHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYIPGLSLRVSREDEVLGLDKIELGESAYYYKDSTD 445          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: AMT3_CAEEL (Putative ammonium transporter 3 OS=Caenorhabditis elegans GN=amt-3 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.152e-16
Identity = 73/244 (29.92%), Postives = 109/244 (44.67%), Query Frame = 2
Query:    8 PRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKE-KFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPL-FFVLHKLKL-LRISPEDEMAGMDLTRHG 730
            PR  RF+    SV +  S +  +LGTF+LW+GW+G N GS   I     TG   G+W    R                     + +    V  + NG+L    +ITA C+V  PW A+V G +++V  IA   L ++   DDP+    +H     WG+I   +F +E K++      +     GL      +LL    +Q        SAT G L  F++ K  L LR++  +E  G D+  HG
Sbjct:  219 PRRNRFNED--SVHQMSSPTNALLGTFLLWWGWFGINAGSVWGI-----TG---GRWRLGARAAVATIMASIGGGATAITISFVKTKKLQVNFLINGILSSIVSITAICAVSRPWHALVIGSISSVFSIAVLPLLDRLHIDDPVGIVPIHLTSSIWGMIAVGIFCEEDKYLGSATNNRS----GLLYSWSFELLWVQ-LQCTAAILIYSATTGFLALFLISKSPLGLRVTDYEEQIGADVIEHG 447          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: Y661_METTH (Putative ammonium transporter MTH_661 OS=Methanobacterium thermoautotrophicum GN=MTH_661 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.505e-16
Identity = 70/233 (30.04%), Postives = 98/233 (42.06%), Query Frame = 2
Query:   47 LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAY 742
            L  H     V+GT +LWFGW+GFN G      SA + GS       +                    GK  L G        +G + G A+IT     V+  A+IV G VAAV+  +A + L   A YDD L+   +HG  G  G +   LFA       V    P    G  + G   LL + +I ++ V  +       L  +L K K LR+  E+E+ G+D+  H    Y
Sbjct:  191 LMPHHLGYSVIGTGLLWFGWFGFNAG------SALSAGSLAANAMIVTNTSAAAGMIGWILMDRLKTGKPTLLG------ALSGAVAGLASITPAAGFVDIGASIVTGLVAAVICYLAVSWLKPAAGYDDALDVFGIHGVSGIIGTLGVGLFA-------VPALNPSLTSGGLLTGSTSLLVSQLIGVVTVTVYTFVVTYILAMLLMKFKGLRVEREEEIQGLDINLHEETGY 404          
BLAST of DY305873 vs. ExPASy Swiss-Prot
Match: Y537_SYNY3 (Putative ammonium transporter sll0537 OS=Synechocystis sp. (strain PCC 6803) GN=sll0537 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.965e-16
Identity = 69/250 (27.60%), Postives = 103/250 (41.20%), Query Frame = 2
Query:    5 GPRIGRFDRSGQSV-LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVVA-GWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAYVY 748
            GPR GRF ++G+++ ++G +    VLGT +LWFGW GFN GS             +G    +                       +      V  + NG L G  AITA  +VV    A+V G   + +     K       DD ++A  +HGG G WG +   LF +   V+             +   G +LL   V  +      WV  T+      L+++  LRISPEDE  G++++ H      Y
Sbjct:  183 GPRQGRFPKTGKTLKIQGSNMPFSVLGTLILWFGWLGFNGGST------------FGLTPEVPGIMVNTVLAGVGGMLMAGLISLLQDKMIQVEPLMNGSLAGLVAITASANVVMTPIAMVIGATGSAIAYLVGKKMLHWGVDDAVDAVAVHGGAGVWGTLCVGLFGQLPLVD--------TGLNRWQQCGVQLLGIGVCTLWAFGLAWVFLTL------LNRVFALRISPEDEEIGLNVSEHQATTETY 406          
The following BLAST results are available for this feature:
BLAST of DY305873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
AMT13_SOLLC5.423e-8359.36Ammonium transporter 1 member 3 OS=Solanum lycoper... [more]
AMT2_DICDI2.385e-3836.69Ammonium transporter 2 OS=Dictyostelium discoideum... [more]
AMT3_DICDI4.509e-2932.03Ammonium transporter 3 OS=Dictyostelium discoideum... [more]
Y1017_SYNY33.232e-2731.20Putative ammonium transporter sll1017 OS=Synechocy... [more]
Y108_SYNY31.604e-2629.27Putative ammonium transporter sll0108 OS=Synechocy... [more]
AMT1_CAEEL8.800e-2530.68Putative ammonium transporter 1 OS=Caenorhabditis ... [more]
AMT1_SCHPO4.520e-2132.43Ammonium transporter 1 OS=Schizosaccharomyces pomb... [more]
AMT3_CAEEL1.152e-1629.92Putative ammonium transporter 3 OS=Caenorhabditis ... [more]
Y661_METTH1.505e-1630.04Putative ammonium transporter MTH_661 OS=Methanoba... [more]
Y537_SYNY31.965e-1627.60Putative ammonium transporter sll0537 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CG06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305873 ID=DY305873; Name=DY305873; organism=Citrus sinensis; type=EST; length=1286bp
CGAAGGTCCAAGAATCGGCCGGTTCGACCGCTCCGGCCAGTCAGTCCTAC
GTGGACACAGCGCGTCCCTCGTGGTCCTCGGCACGTTTATGCTGTGGTTT
GGATGGTACGGATTCAACCCGGGATCCTTCACAAAGATACTTAGCGCTTA
CAATACAGGATCTCACTACGGCCAGTGGAGCGCCATTGGCCGTACAGCTG
TCACCACCACATTGGCGGGGTGCACGGCCGCATTGACGACACTATTCGGG
AAAAGAATCTTGTCCGGACACTGGAACGTCACGGACGTCTGCAACGGCCT
GCTTGGCGGGTTCGCTGCGATCACCGCCGGATGCTCCGTCGTGGAGCCCT
GGGCCGCCATCGTATGCGGATTCGTGGCCGCCGTGGTCCTGATCGCATGC
AACAAGCTGGCCGAGAAGGCAAAGTACGACGACCCTTTGGAAGCCGCACA
GTTGCATGGGGGCTGCGGTGCATGGGGAGTCATATTCACTGCTTTATTCG
CCAAGGAGAAATTTGTCAACGAGGTGTACCCGGGTAAACCCGGAAGGCCT
TACGGGCTGTTCATGGGCGGCGGCGGGAAGCTCTTGGCCGCTCACGTGAT
CCAAATATTGGTTGTTGCGGGTTGGGTTAGCGCCACCATGGGCCCGTTGT
TTTTTGTCCTTCACAAGCTTAAGCTTTTGCGGATATCGCCCGAGGATGAG
ATGGCGGGTATGGACCTGACCCGGCACGGCGGGTTCGCTTACGTTTATCA
TGATGACAATGATGTTCAAAGAATGGGGATTCAGTTGAGAAAAAATTGAA
CCCACTGCTACTACCCCCATCTTCGGTTAAGTTTAATTTTATTATTTTTT
AATTTTTTATTTTCTTTTTCATTTTTTGGTTGTTTTTTGTTTTTTTTTTT
TTAAATTGCATGTGGTAAAAAGGGAAAAATAAATGAAAATCCAATTACCC
TTGTAGGGTTGGGGGAATTTATAAAATGGATTGGAAGGATTTGGCGAGAA
GGCGGGAAAAAAAAATACCTTGGAACCAGATATTTGTTGCTTTTTTTTAC
AAAAAAATAATAATACGAATTACAAAAAAAAACTGCCCGGGGGGGGGGGG
CACGGTATCCATAATTCCCCCCATCCATGACCATGGGCTTGAACATAAAT
GTTTGAAGTCCGGGCCCGCACGTAGTTTTCTCACACCTCTATGTTGGAAT
GAGGTCAACGGCATTCCGCTGTGAGGATTTATCATCACTCTGATAAAGAT
TGACCGATTCATGTGATACTCCGTAAAGATGAGATA
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