DY305869

Overview
NameDY305869
Unique NameDY305869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305869 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.667e-18
Identity = 55/215 (25.58%), Postives = 91/215 (42.33%), Query Frame = 3
Query:  285 PKLCVNGCAFFGTAANMGLCSKCYRD---------------------------LRVKEDQAASAKAAMEKSLNLKSP------------------------KQIHQTPELETAKVAAEPFVGXXXXXXXXXXXXVEQP-EPQAKG-------PTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 752
            P LC  GC F+G     G+CS CY++                           ++  +     A++A++ + +   P                        K + +T +L+  +  AE  V              +QP E Q+K          RC  C KKVGLTGF+C+CG+ +CG+HRY + H+C++++K    + I + NPVV  +K+ +I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSESLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDLQGPR--AEGLVPLECDPPSSVSDTTQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of DY305869 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.001e-17
Identity = 53/198 (26.77%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  285 PKLCVNGCAFFGTAANMGLCSKCYRDLRVKEDQA---ASAKAAMEKSLNLKSPKQIHQ--TPELETA-----------KVAAEPFVGXXXXXXXXXXXXVEQPEPQAKG--------------------------PTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 752
            P LC  GC F+G     G+CS CY++   +++ +    S  A    SL+   P Q      PE ++A            V+ +  +             V++  P+ +                             RC  C KKVGLTGF+C+CG+ +CG+HRY + H+C++++K    + I + NPVV  +K+ +I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of DY305869 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.466e-16
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  570 RCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 752
            RC  C K+VGLTGF+C+CG  FC  HR+ E H+C+FD+K  GR+ IARANPV++A K+ +I
Sbjct:  114 RCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIKI 174          
BLAST of DY305869 vs. ExPASy Swiss-Prot
Match: SAP13_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 13 OS=Oryza sativa subsp. japonica GN=SAP13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.686e-13
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  543 PEPQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKV---TGRDAIARANPVVKADKLDRI 752
            P P+AK  +RC +C ++VGL GF+C+CG+ FCG H  P         ++    GRDAIARANPVV ADK+D++
Sbjct:  166 PPPRAKTKSRCAACGRRVGLMGFECRCGAVFCGAH--PLLGQARLWLRLQGRAGRDAIARANPVVSADKVDKL 236          
BLAST of DY305869 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.267e-12
Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 3
Query:  144 SVDLHTETEETDRGGSCCNRVREDP----KP*FGKKMGSEQSDGTSYTTSEPKLCVNGCAFFGTAANMGLCSKCYRDLRVKEDQ------AASAKAAMEKSLNLKSPKQIHQTPELETAKV-------AAEPFVGXXXXXXXXXXXXVEQP-EPQAKGPTRCLSCNKKVGL-TGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 752
            S+D+   T+ +    +C   V+ D          K    + ++ T+  + EP  CVN  +F  + A     ++          Q      + + +   E++    SP+  H    L T  V       AA   VG            V+ P + + K    C  C KK GL + ++C+CG+ FC  HRY E H CT+D+K  GR  +  ANPVV A KL +I
Sbjct:  509 SLDVQNITDSSFSRTTCFQGVKVDSLGKRSDVISKVEARDITEMTNKASKEPVGCVNNISFLASLAGSTSRNRLQSTRGAGRLQNSGTGLSTNLQHFQEENFRKSSPQLEHTGVFLSTHGVGMNGNNAAAGKSVGECTTHHLPP---VKAPLQTKKKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of DY305869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ZFAN6_MOUSE7.667e-1825.58AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_BOVIN1.001e-1726.77AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP15_ORYSJ2.466e-1657.38Zinc finger AN1 domain-containing stress-associate... [more]
SAP13_ORYSJ5.686e-1349.32Zinc finger AN1 domain-containing stress-associate... [more]
ANUB1_HUMAN1.267e-1227.48AN1-type zinc finger and ubiquitin domain-containi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2CG01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305869 ID=DY305869; Name=DY305869; organism=Citrus sinensis; type=EST; length=1250bp
GCCCAACTCTATCGACCGAAACCAAAACCAGAACCAGCACCGCGGTTCTG
CTCCTGCGCTTCCCATTTGGTACCTAAATAAATTTCTCTTTCGTTCTTTT
GTTAATCGATAGATATCATAATTTTTCCTTCACTCTGATCTCATCGGTTG
ATTTACACACAGAAACAGAAGAGACAGATCGCGGCGGGTCCTGCTGTAAC
AGAGTCCGAGAAGATCCAAAACCCTAATTCGGAAAAAAGATGGGTTCAGA
ACAAAGCGATGGAACCAGCTACACCACATCTGAGCCAAAGCTCTGCGTCA
ACGGTTGTGCCTTCTTCGGCACTGCGGCGAATATGGGCTTATGCTCAAAG
TGTTACAGGGATTTGCGGGTTAAGGAGGACCAAGCTGCCTCCGCAAAAGC
CGCTATGGAGAAATCTCTCAATTTGAAGTCACCGAAGCAAATCCATCAGA
CGCCAGAATTGGAGACTGCCAAGGTGGCTGCTGAGCCCTTTGTGGGTTCC
TCGTTGTCTGCTGCGGCCTCTCAACAGTTGAGTGTTGAGCAGCCTGAGCC
CCAAGCCAAGGGGCCTACCAGGTGCTTGAGTTGCAACAAGAAGGTCGGAT
TGACAGGGTTCAAGTGTAAGTGCGGGAGTACTTTCTGTGGAATCCATCGG
TACCCAGAGAAGCATGATTGTACATTTGATTTTAAGGTTACTGGTCGTGA
CGCTATTGCCAGAGCAAATCCTGTTGTCAAAGCTGATAAGCTGGACAGGA
TCTGAAATCAGAGTCTGGTAATTGGGTTTGCTTTGGTATGGTAATTGTGT
CAGTTGGGTTATTGTTGATTAAGCTTAGCTTTATTTCCCTGCGGTCCTGT
TAGTGTTGGTCAGGACTTGGGAGGGACCCCTAAATGTATTTTCCTATCTG
CCTTTGAAAATACTCAAAATAAGGCCAAAAATCTTCCCCCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATCCGAGGGGGGGCCCCGGTCCCAAT
TTCCCCCCAAATGGGAGCCAAATAAAATTATCCCGGGCCCCCCTTTTTAA
AACCCCCCCGGACCAGGGAAAAAACCCCGGGCGCTTATCCCCCCTTTTAA
TTCCCCCCTTCACCACAACCCCCCCCCTCTTTCCCCCGCCCTAGAGGGGG
AAAAAAAACAAAAAAAAACCCCCCCCCCCCCCCCCGCTTCCCCCCCCTCC
CCCCACCACCCCGAATAGGGTGCGCCCCCGCCCCCCCGGAAAAGGAGGGG
back to top