DY305865

Overview
NameDY305865
Unique NameDY305865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1240
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.055e-19
Identity = 52/189 (27.51%), Postives = 95/189 (50.26%), Query Frame = -3
Query:  417 KWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 983
            K   +    L   P E L  NF     +  DE+      R+ +L +++ + P +      + + N   F  RF EA  ++S++F+  D T+PRE  ER+  ER+   R+ +N++ACEG ER+ER E   +W+AR + AGF   P++ ++   +   +K  Y   + + ++   +   W+ + +  +S W
Sbjct:  404 KTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAW 592          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.378e-19
Identity = 53/174 (30.46%), Postives = 94/174 (54.02%), Query Frame = -3
Query:  417 EVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 938
            E LA NF     +  DE+  V   R+ +L+L++ + P++        + N   F+ RF E + H+ ++F+  D  + R+  ER+  E+    RE +N+IACEG+ER ER E   +W++R   AGFK  PL+  +   + G L++ Y + + +++ +  +  GWK + +  S  W
Sbjct:  424 EALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLES-YSEKYTLEERDGALYLGWKNQPLITSCAW 596          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.800e-19
Identity = 50/180 (27.78%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  417 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 956
            L++   E L  NF     +  DE+  +   R+ +L++++ + P +        + N   F+ RF E + +++++F+  D  +PR   ER+  E+    R+ +N+IACEG ER+ER E   +W++R   AGF+  PL+  +   +   L+  Y   + I++ +  +  GW  RI+ +S  W
Sbjct:  234 LDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRD-YSNGYAIEERDGALYLGWMDRILVSSCAW 412          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.238e-19
Identity = 52/180 (28.89%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  417 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 956
            L + P E LA NF     +  DE+      R+ +L++++ + P +        + N   F  RF E + +++++F+  D T+PR+  +R+  E+    R+ +N+IACEG +RVER E   +W++R   AGF   PL+  L+   +  L   Y   + +++ +  +  GW  R + AS  W
Sbjct:  311 LGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLS-PLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAW 489          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.874e-17
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = -3
Query:  417 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDT--TIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 956
            LEL   E +A N      + L   G +      VL  ++ +KPDI        ++N P F+ RF E++ ++S+LFD  +     P    ++LM   EVY G++  NV+ACEG ERVER ET  QW+AR   AGF  + L     ++    L  +   D + ++++N  ++ GW  R + A+S W
Sbjct:  397 LELRDGESVAVNSVFELHSLLARPGGIE----RVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLM--SEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAW 574          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.863e-16
Identity = 46/150 (30.67%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  411 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVP 857
            VL +++++KP+I        ++N P FV RF E++ ++S+LFD  + +   +D    M      G++  NV+ACEG +RVER ET  QW+ R   AGF  + L     ++    L  +   + + ++++   ++ GW  R + A+S W P
Sbjct:  425 VLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNSQDK---MMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKP 571          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.079e-16
Identity = 60/185 (32.43%), Postives = 96/185 (51.89%), Query Frame = -3
Query:  417 LELDPDEV--LA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH--KDFVIDQDNNWMLQGWKGRIVFASSCW 956
            LEL P E+  +A N        L  TG +      VL ++++IKP IF       S+N P F+ RF E++ ++S+LFD  +     +D  ++M   EVY G++  N++ACEG +RVER ET  QW  R   +GF    L      K    L A ++  + + ++++N  ++ GW  R +  +S W
Sbjct:  398 LELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGVPSSQD--KVM--SEVYLGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLGSNAF-KQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAW 573          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.577e-15
Identity = 42/149 (28.19%), Postives = 79/149 (53.02%), Query Frame = -3
Query:  417 NSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 863
            +S L  I  + P + V +  +  +N    + R  E+++ +++LFD  +T +PR   +R+  E+ ++G E  N+I+CEG ER ER E  ++W  R   AGF  +PL+   M +    L+      + I +++   +  W+ R +++ S W
Sbjct:  330 DSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAW 478          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.060e-15
Identity = 48/149 (32.21%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  417 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 857
            +L  ++ IKP I        ++N   F+ RF EA+ ++SSLFD  + +      +R+M   EVY GR+ +NV+A EG +RVER ET  QW+ R   AGF  + L     ++    L  +   D + +++++  ++ GW+ R +  +S W
Sbjct:  398 LLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVM--SEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAW 544          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.060e-15
Identity = 58/185 (31.35%), Postives = 98/185 (52.97%), Query Frame = -3
Query:  417 LELDPDEV--LA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH--KDFVIDQDNNWMLQGWKGRIVFASSCW 956
            LEL P E+  +A N        L   G ++     VL ++ +IKP+IF       ++N+P F+ RF E++ ++S+LFD  +     +D  ++M   EVY G++  NV+AC+G +RVER ET  QW+ R   AGF    +      K    L A ++  + + +++ +  ++ GW  R + A+S W
Sbjct:  353 LELRPSEIESVAVNSVFELHKLLGRPGAID----KVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQD--KVM--SEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAF-KQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAW 528          
The following BLAST results are available for this feature:
BLAST of DY305865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SCL1_ARATH1.055e-1927.51Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCL5_ARATH1.378e-1930.46Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL21_ARATH1.800e-1927.78Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
PAT1_ARATH5.238e-1928.89Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
GAI1_VITVI2.874e-1733.15DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
GAIP_CUCMA1.863e-1630.67DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
RGA2_BRACM7.079e-1632.43DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL3_ARATH1.577e-1528.19Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
RGL2_ARATH2.060e-1532.21DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
GAI_ARATH2.060e-1531.35DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CF05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305865 ID=DY305865; Name=DY305865; organism=Citrus sinensis; type=EST; length=1240bp
AATGAAATTTCAAATTTCACTTTCATTATTACTGATAGAACCAAAACACA
ACTAATGTAACTAAAGGAAATATTTACAGAAACAAAAAGATGAGGTCTAC
ACTGGAGTACCATCACAAACAGCCCCTGCAACAGAACTTAGGGGATTGGA
GAATGTCCCCAAGCTTTTCTCTACCGCATGAAGTTTCTAAACCTATAATT
GTCTACCACCAACATCATCAAGATAACCATACTTTGCACAGTGACCAACG
AGCTATAACCATACTACAGTAATTGCAGGATCATCTGCTGGTTTTTTTTT
TTATTCACTGATGATAAACACCAGGTCAGGAATCTTCATCCACTTCCCAG
GTTATTCTTTCCTGACTGGTCCAGGAAAAATATCATACCTCCCAATCACA
ACTCTGGCGCAGGTACCCAACAAGAGGAAGCAAAAACAATTCTCCCCTTC
CATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATTACAAAGTCCTTGTG
GTACCAAGCCTTCAACTTACCCATAAGTTTCTCCATCAGCTCCTGGTTCA
GTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCGCCTGCCATTGCTTG
TATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCACAGGCAATAACATT
CATTGCCTCTCGCCCATAAACTTCTCTTTCAAACATCAACCTCTCTGGAT
CTTCACGGGGTATGGTAGTATCAAACATATCAAACAGGGAAGAGAAGTGA
AAGATTGCTTCACGAAATCTTGTGACAAAAAAAGGAGCATTGTAGGACCC
ATTGACAATAGAATTGACAAAAATATCAGGCTTTATCTTCCTGATTAGCT
TCAAGACGGAGTTCCTCGGACAGTTCACATCCCCCGTCTCATCAAGGAAG
TTCTAAAACCCGGAACAAAAGTTTCAAGCAAGCACCTCATCCGGGTCCAA
CTCCAGGCCCCCATTTTGGATTGTTTCCCATTTCTGGAAGGGCCAAAAAA
TTTTAACCCCAAGGAAAAAATAAACCCCCTAAAAAAAACTTAAACAAACA
AACAAACAGTCCCCCCCCAATTCCTTTTTGCCGGGCCCAAAAAACCCAAG
GTTGTGGGAAAACCCCTATCCCCATTTTTTTCTCCTAAACCTTGGGGGAG
GGGGGCCCCCCCGGGTTTTTCCCCCCTTGATAAAAAAAAAAAAATTGTAA
AAAGGGAAACCCCCTCCCCGCCCCCCCCTCTATTTTGGAA
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