DY305865

Overview
NameDY305865
Unique NameDY305865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1240
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.513e-15
Identity = 49/147 (33.33%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  417 LKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 854
            L  I+ I+PDI        ++N   F+ RF E++ ++SSLFD  +   P +D  R+M E  + GR+ +N++ACEG +RVER ET  QW+ R    GFK + +     ++    L  +   D + ++++   +L GW+ R + A+S W
Sbjct:  363 LSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGP-PSQD--RVMSELFL-GRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAW 505          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.022e-14
Identity = 41/148 (27.70%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  417 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCW 857
            V+ +++++KP+I        ++N P F+ RF E++ ++S+LFD  +++   +D    M      G++  NV+ACEG +RVE  ET  QW+ R   +GF+ + L     ++    L  +   + + ++++N  +  GW  R +  +S W
Sbjct:  432 VMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDK---MMSEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAW 576          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.277e-14
Identity = 47/166 (28.31%), Postives = 83/166 (50.00%), Query Frame = -3
Query:  402 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTT-------------IPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCWVPAPE 857
            VL  I++I P I        ++NA  F+ RF EA+ ++S++FD  +++              P  + + L+      GR+  NV+ACEG +RVER ET  QW+ R   +GF  + L     ++    L  +   D + +++++  ++ GW  R + A+S W   P+
Sbjct:  413 VLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKLLPD 578          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.885e-14
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = -3
Query:  417 LELDPDEV--LA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH--KDFVIDQDNNWMLQGWKGRIVFASSCW 956
            LEL P E   +A N        L  TG +      V  ++++IKP IF       ++N P F+ RF E++ ++S+LFD  +     +D  ++M   EVY G++  N++ACEG +RVER ET  QW  R   +GF    L      K    L A ++  + + ++++N  ++  W  R +  +S W
Sbjct:  392 LELRPSETEAVAVNSVFELHKLLGRTGGIE----KVFGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGAPSSQD--KVM--SEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAF-KQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAW 567          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.654e-14
Identity = 46/155 (29.68%), Postives = 84/155 (54.19%), Query Frame = -3
Query:  399 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCWVPAPEL 857
            +L  ++ +KP +        ++N   F+ RF EA+ ++SSLFD  +  +     +R+M   EVY GR+ +N++A EG +R+ER ET  QW+ R   AGF  + L  +  ++    L      D + +++++  ++  W+ + + A+S W  A EL
Sbjct:  369 LLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDRVM--SEVYLGRQILNLVATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENDGSLMLAWQTKPLIAASAWKLAAEL 521          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.476e-13
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = -3
Query:  417 LELDPD--EVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH-KDFVIDQDNNWMLQGWKGRIVFASSCW 956
            LEL P   E +A N        L   G +      VL ++++IKP IF       ++N P F+ RF E++ ++S+LFD  +     +D  ++M   EVY G++  N++ACEG +RVER ET  QW  R   +G     L     ++    L  +   + + +++ N  ++ GW  R +  +S W
Sbjct:  405 LELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQD--KVM--SEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAW 580          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.295e-13
Identity = 40/147 (27.21%), Postives = 74/147 (50.34%), Query Frame = -3
Query:  417 LKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 854
            L  I+ +   I   +    ++    F+ RF EA+ H+ ++FD  + T+P    ERL  E+  +G+E ++V+A E  ER +R   ++ W+    R GF  +P+    + +    L+  Y  + + +   NN +  GW+ R +F+ S W
Sbjct:  298 LSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRPLFSVSSW 444          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.295e-13
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = -3
Query:  429 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFA 857
            V+  I+ +KP I        ++N P F+ RF EA+ ++S+LFD  + +      + L       GR+  NV+ACEG++RVER E   QW+ R   AG   + L     ++    L  +   D + ++++N  ++ GW  R + A
Sbjct:  385 VVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIA 528          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.382e-11
Identity = 55/198 (27.78%), Postives = 89/198 (44.95%), Query Frame = -3
Query:  417 ELDPDE---VLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERL--------------MFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 953
            E DP+E   V+A N        L + G +      VL  +R ++P I        ++N+  F+ RF E++ ++S++FD  +       P  +                  EVY GR+  NV+ACEG ER ER ET  QW+ R   AGF+ + L     ++    L  +   D + +++    +  GW  R + A+S W
Sbjct:  425 EEDPNEEPEVIAVNSVFEMHRLLAQPGALE----KVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGGSSGGGPSEVSSGAAAAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 618          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.357e-11
Identity = 49/191 (25.65%), Postives = 87/191 (45.55%), Query Frame = -3
Query:  417 IQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACE--GLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHK----DFVIDQDNNWMLQGWKGRIVFASSCW 971
            +      +DPDEVLA NF       LDET  +    ++ L+L + + P +        S N   F  R + A+  +S++F+  +  + R+  ER+  ERE++GR    +I  E  G+ R ER E  +QW+     AGF+ + L+   + +   K+  W +       +++    ++   W    +   S W
Sbjct:  399 LNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIV---DTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHR-ERMEEKEQWRVLMENAGFESVKLSNYAVSQ--AKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSW 583          
The following BLAST results are available for this feature:
BLAST of DY305865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RGL1_ARATH3.513e-1533.33DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
GAIPB_CUCMA1.022e-1427.70DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
GAI_SOLLC2.277e-1428.31DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
RGA1_BRACM3.885e-1430.81DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGL3_ARATH8.654e-1429.68DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
RGA_ARATH1.476e-1329.89DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
SCL18_ARATH4.295e-1327.21Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
GAI_GOSHI4.295e-1329.86DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
RHT1_WHEAT1.382e-1127.78DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
SCL4_ARATH2.357e-1125.65Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CF05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305865 ID=DY305865; Name=DY305865; organism=Citrus sinensis; type=EST; length=1240bp
AATGAAATTTCAAATTTCACTTTCATTATTACTGATAGAACCAAAACACA
ACTAATGTAACTAAAGGAAATATTTACAGAAACAAAAAGATGAGGTCTAC
ACTGGAGTACCATCACAAACAGCCCCTGCAACAGAACTTAGGGGATTGGA
GAATGTCCCCAAGCTTTTCTCTACCGCATGAAGTTTCTAAACCTATAATT
GTCTACCACCAACATCATCAAGATAACCATACTTTGCACAGTGACCAACG
AGCTATAACCATACTACAGTAATTGCAGGATCATCTGCTGGTTTTTTTTT
TTATTCACTGATGATAAACACCAGGTCAGGAATCTTCATCCACTTCCCAG
GTTATTCTTTCCTGACTGGTCCAGGAAAAATATCATACCTCCCAATCACA
ACTCTGGCGCAGGTACCCAACAAGAGGAAGCAAAAACAATTCTCCCCTTC
CATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATTACAAAGTCCTTGTG
GTACCAAGCCTTCAACTTACCCATAAGTTTCTCCATCAGCTCCTGGTTCA
GTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCGCCTGCCATTGCTTG
TATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCACAGGCAATAACATT
CATTGCCTCTCGCCCATAAACTTCTCTTTCAAACATCAACCTCTCTGGAT
CTTCACGGGGTATGGTAGTATCAAACATATCAAACAGGGAAGAGAAGTGA
AAGATTGCTTCACGAAATCTTGTGACAAAAAAAGGAGCATTGTAGGACCC
ATTGACAATAGAATTGACAAAAATATCAGGCTTTATCTTCCTGATTAGCT
TCAAGACGGAGTTCCTCGGACAGTTCACATCCCCCGTCTCATCAAGGAAG
TTCTAAAACCCGGAACAAAAGTTTCAAGCAAGCACCTCATCCGGGTCCAA
CTCCAGGCCCCCATTTTGGATTGTTTCCCATTTCTGGAAGGGCCAAAAAA
TTTTAACCCCAAGGAAAAAATAAACCCCCTAAAAAAAACTTAAACAAACA
AACAAACAGTCCCCCCCCAATTCCTTTTTGCCGGGCCCAAAAAACCCAAG
GTTGTGGGAAAACCCCTATCCCCATTTTTTTCTCCTAAACCTTGGGGGAG
GGGGGCCCCCCCGGGTTTTTCCCCCCTTGATAAAAAAAAAAAAATTGTAA
AAAGGGAAACCCCCTCCCCGCCCCCCCCTCTATTTTGGAA
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