DY305865

Overview
NameDY305865
Unique NameDY305865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1240
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.078e-11
Identity = 55/197 (27.92%), Postives = 88/197 (44.67%), Query Frame = -3
Query:  417 ELDPDE---VLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDT-------------TIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 953
            E DP+E   V+A N        L + G +      VL  +R ++P I        ++N+  F+ RF E++ ++S++FD  +                P           EVY GR+  NV+ACEG ER ER ET  QW+ R   AGF+ + L     ++    L  +   D + +++    +  GW  R + A+S W
Sbjct:  421 EEDPNEEPEVIAVNSVFEMHRLLAQPGALE----KVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGGPSEVSSGGAAPAAAAGTDQVMSEVYLGRQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 613          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.078e-11
Identity = 52/189 (27.51%), Postives = 86/189 (45.50%), Query Frame = -3
Query:  417 DPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFD----------TTIPREDPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 947
            D  EV+A N        L + G +      VL  +R ++P I        ++N+  F+ RF E++ ++S++FD  +             P           EVY GR+  NV+ACEG ER ER ET  QW++R   +GF  + L     ++    L  +   D + +++ +  +  GW  R + A+S W
Sbjct:  438 DEPEVIAVNSVFELHRLLAQPGALE----KVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAGAGSGQSTDASPAAAGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAW 622          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.020e-11
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = -3
Query:  411 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFV----NSIVNGSYNAPF---FVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQ--DNNWMLQGWKGRIVFASSCWVP 956
            L++ PDEVLA N C G  + +   G    PR++V+   R+++P I       + + G     F   F+  F E +  F   F+ ++ + PR   ERLM ER   GR  ++++ACE  +  ER ET ++W  R   +GF  +  + E+ + +   L+ +    + + Q  D   +   W+ + V  +S W P
Sbjct:  345 LDVKPDEVLAIN-CVGAMHGIASRGS---PRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLERAA-GRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.857e-11
Identity = 46/161 (28.57%), Postives = 79/161 (49.07%), Query Frame = -3
Query:  417 VLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPRE------------DPERLMFEREVY-GREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKD-FVIDQDNNWMLQGWKGRIVFASSCW 857
            VL  +  ++P I        ++N+  F+ RF E++ ++S++FD  +     +              +++M   EVY GR+  NV+ACEG ER ER ET  QW+ R  RAGF+ + L     ++    L  +   D + +++    +  GW  R + A+S W
Sbjct:  462 VLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGQAELSPPAAGGGGGTDQVM--SEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAW 620          
The following BLAST results are available for this feature:
BLAST of DY305865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SLN1_HORVU3.078e-1127.92DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
DWRF8_MAIZE3.078e-1127.51DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SHR_ARATH4.020e-1128.27Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SLR1_ORYSJ6.857e-1128.57DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CF05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305865 ID=DY305865; Name=DY305865; organism=Citrus sinensis; type=EST; length=1240bp
AATGAAATTTCAAATTTCACTTTCATTATTACTGATAGAACCAAAACACA
ACTAATGTAACTAAAGGAAATATTTACAGAAACAAAAAGATGAGGTCTAC
ACTGGAGTACCATCACAAACAGCCCCTGCAACAGAACTTAGGGGATTGGA
GAATGTCCCCAAGCTTTTCTCTACCGCATGAAGTTTCTAAACCTATAATT
GTCTACCACCAACATCATCAAGATAACCATACTTTGCACAGTGACCAACG
AGCTATAACCATACTACAGTAATTGCAGGATCATCTGCTGGTTTTTTTTT
TTATTCACTGATGATAAACACCAGGTCAGGAATCTTCATCCACTTCCCAG
GTTATTCTTTCCTGACTGGTCCAGGAAAAATATCATACCTCCCAATCACA
ACTCTGGCGCAGGTACCCAACAAGAGGAAGCAAAAACAATTCTCCCCTTC
CATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATTACAAAGTCCTTGTG
GTACCAAGCCTTCAACTTACCCATAAGTTTCTCCATCAGCTCCTGGTTCA
GTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCGCCTGCCATTGCTTG
TATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCACAGGCAATAACATT
CATTGCCTCTCGCCCATAAACTTCTCTTTCAAACATCAACCTCTCTGGAT
CTTCACGGGGTATGGTAGTATCAAACATATCAAACAGGGAAGAGAAGTGA
AAGATTGCTTCACGAAATCTTGTGACAAAAAAAGGAGCATTGTAGGACCC
ATTGACAATAGAATTGACAAAAATATCAGGCTTTATCTTCCTGATTAGCT
TCAAGACGGAGTTCCTCGGACAGTTCACATCCCCCGTCTCATCAAGGAAG
TTCTAAAACCCGGAACAAAAGTTTCAAGCAAGCACCTCATCCGGGTCCAA
CTCCAGGCCCCCATTTTGGATTGTTTCCCATTTCTGGAAGGGCCAAAAAA
TTTTAACCCCAAGGAAAAAATAAACCCCCTAAAAAAAACTTAAACAAACA
AACAAACAGTCCCCCCCCAATTCCTTTTTGCCGGGCCCAAAAAACCCAAG
GTTGTGGGAAAACCCCTATCCCCATTTTTTTCTCCTAAACCTTGGGGGAG
GGGGGCCCCCCCGGGTTTTTCCCCCCTTGATAAAAAAAAAAAAATTGTAA
AAAGGGAAACCCCCTCCCCGCCCCCCCCTCTATTTTGGAA
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