DY305849

Overview
NameDY305849
Unique NameDY305849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1166
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.288e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  539 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            P   ++ I GLD     IKE +  P+   + F  L  A P+ +LL+GP GTGKTLL R +A     TF +++GS LV K++GE  ++    F++A
Sbjct:  481 PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVA 574          

HSP 2 Score: 20.7866 bits (42), Expect = 2.288e-11
Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  808 TFCYGREHAPSIIFMDEID 864
            +F   R   PS+IF+ +ID
Sbjct:  570 SFLVARCRQPSVIFVSDID 588          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.289e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  548 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELF 814
            ++  + G+ +   E++E ++  +K PE F  LG   PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+   R LF
Sbjct:  307 SFQDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLF 394          

HSP 2 Score: 22.7126 bits (47), Expect = 2.289e-11
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  811 FCYGREHAPSIIFMDEID 864
            F   R  AP I+++DEID
Sbjct:  394 FKEARARAPCIVYIDEID 411          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.848e-11
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  560 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMDRELFVMA 823
            IGGLD++   I +      +  PEL E LGI   KG+LLYGPPGTGKTL+AR +    +    + V+G +++ KY+GE     R LF  A
Sbjct:  225 IGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEA 314          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.848e-11
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  560 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            I GL+     IK+ +  PI  P++F  L    P+ +LL+GP GTG+TLL R +A      F+ +SGS LV K++GEG ++ +  F++A
Sbjct:  466 IAGLEMAKATIKDEVLWPILRPDMFSGLATL-PRSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIA 552          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.966e-11
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  560 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELF 814
            + G+ +   E++E ++  +K PE F  LG   PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+   R LF
Sbjct:  311 VAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLF 394          

HSP 2 Score: 22.7126 bits (47), Expect = 2.966e-11
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  811 FCYGREHAPSIIFMDEID 864
            F   R  AP I+++DEID
Sbjct:  394 FKEARARAPCIVYIDEID 411          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.858e-11
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  560 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            I G+ +  + ++++IE P+K+  +++   +  P G+LL+G PG GKT LA A++      FI + G EL+ KYIG+  +  R+LF  A
Sbjct:  608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRA 695          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 8.286e-11
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  521 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            +K+ K  +  +  IG L      + E +E P K+  +F +  +    G+LLYG PG GKTLLA AVA      FI V G E++ K+IG   +  RELF  A
Sbjct:  686 VKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERA 786          
BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.286e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  560 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMDRELFVMA 823
            IGGLD++   I +      +  PEL E LG    KG+LLYGPPGTGKTL+AR +    +    + V+G +++ KY+GE     R LF  A
Sbjct:  220 IGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEA 309          
The following BLAST results are available for this feature:
BLAST of DY305849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 358
Match NameE-valueIdentityDescription
FIGN_HUMAN2.288e-1138.95Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
SPG7_RAT2.289e-1140.45Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
NSF2_DROME2.848e-1143.33Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
FIGN_DANRE2.848e-1139.77Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
SPG7_HUMAN2.966e-1142.35Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
PEX1_SCHPO4.858e-1136.36Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
PEX1_YEAST8.286e-1138.61Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
NSF1_DROME8.286e-1142.22Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CD02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305849 ID=DY305849; Name=DY305849; organism=Citrus sinensis; type=EST; length=1166bp
CTTACCCGAACGAGACTTGATCCGAAAGAAAATTAAATTCGGAAGAAATC
GAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCA
GCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGA
AGACAAGGCAGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAAC
TCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTACGAGCC
CATCGTAACGAACTCAATTCGAGAGTGCGGATGCTTAAAGAATAATTACA
GCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGG
GAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTT
GATATTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGT
TGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAG
TAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACA
TATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGT
CATTGAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAG
CTCAACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGCAAAACA
CTGTTGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCATCAGGGT
TTCTGGTTCTGAATTAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGG
ATAGAGAACTTTTTGTTATGGCAGGGAACATGCTCCGTCTATCATTTTTA
TGGATGAAATTGACAGTATCGGATCTGGCCGAATGGGATCTGGCAGCGGA
AATGGTGAACGTGAGGTGCAGAGGACTAAGCTGGACCGGCCCACCAGCTT
GGATGGATTTAACCACCAACCAAAATAAGGGTCCTCGGGACGACAAAACA
ATTGGAATTTCCCAATTCAAGCTCTTCCCCGGCCCGAAACTATTTGGAGA
AAAAAATTGAATTTCCAAACCCCCACTGGAAAAAGTCCCGGCTTTGGAAT
TCCCTAAAAAATTTCTTCTCCAAAAAAAAAAGGAATTTTTATTGGGGGGG
GGCTTTTTATTTTTTT
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