DY305849 | Citrus Genome Database

Overview


Name	DY305849
Unique Name	DY305849
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1166

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.991e-38
Identity = 80/231 (34.63%), Postives = 130/231 (56.28%), Query Frame = 2

Query:  140 RSIEDKAEGLRQYYLQHIHELQLQVRQKTHNLNRLRAHRNE---LNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            R ++ + + ++   L+  HELQ    +   N  +++ ++     +++ + +L       +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++ R+ F +A
Sbjct:   46 RLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALA 275

HSP 2 Score: 38.5058 bits (88), Expect = 1.991e-38
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGF 960
            F   +E APSIIF+DE+D              +REVQRT L+    LDGF
Sbjct:  272 FALAKEKAPSIIFIDELD-AIGTKRFDSEKAGDREVQRTMLELLNQLDGF 320

HSP 3 Score: 25.409 bits (54), Expect = 1.991e-38
Identity = 13/45 (28.89%), Postives = 27/45 (60.00%), Query Frame = 3

Query:  942 HQLGWI*PPTKIRVLGTTKQLEFPNSSSSPARNYLEKKIEFPNPH 1076
            +QL    P T+++V+  T +++  + +   +   L++KIEFP P+
Sbjct:  315 NQLDGFQPNTQVKVIAATNRVDILDPALLRSGR-LDRKIEFPMPN 358

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.991e-38
Identity = 80/231 (34.63%), Postives = 130/231 (56.28%), Query Frame = 2

Query:  140 RSIEDKAEGLRQYYLQHIHELQLQVRQKTHNLNRLRAHRNE---LNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            R ++ + + ++   L+  HELQ    +   N  +++ ++     +++ + +L       +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++ R+ F +A
Sbjct:   46 RLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALA 275

HSP 2 Score: 38.5058 bits (88), Expect = 1.991e-38
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGF 960
            F   +E APSIIF+DE+D              +REVQRT L+    LDGF
Sbjct:  272 FALAKEKAPSIIFIDELD-AIGTKRFDSEKAGDREVQRTMLELLNQLDGF 320

HSP 3 Score: 25.409 bits (54), Expect = 1.991e-38
Identity = 13/45 (28.89%), Postives = 27/45 (60.00%), Query Frame = 3

Query:  942 HQLGWI*PPTKIRVLGTTKQLEFPNSSSSPARNYLEKKIEFPNPH 1076
            +QL    P T+++V+  T +++  + +   +   L++KIEFP P+
Sbjct:  315 NQLDGFQPNTQVKVIAATNRVDILDPALLRSGR-LDRKIEFPMPN 358

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.179e-38
Identity = 85/232 (36.64%), Postives = 135/232 (58.19%), Query Frame = 2

Query:  137 ERSIEDKAEGLRQYYLQHIH---ELQLQVRQKTHNLNRLRAHRNELNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            E +  ++   L+ +Y+  +    ELQ Q       L+ + A R EL   V  L+   + L+    Y+  V  +      ++K H   + V+               RVA+ NDS+ +  +L  + D     M+V++ P  TY  IGGLD Q++E++E +E P+ +PE F+++G+  P GVLL+GPPGTGKT+LA+AVA+ TD +FI+++GSELV+K+IGEGSR+ R+LF +A
Sbjct:   18 ESTPAERLNALQDHYVDIVAVNGELQAQ-------LDDVEARREELREEVNRLQRENETLKTASLYLATVEDLPEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAI-NDSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELA 241

HSP 2 Score: 29.6462 bits (65), Expect = 3.179e-38
Identity = 20/67 (29.85%), Postives = 31/67 (46.27%), Query Frame = 1

Query:  835 PSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGFNHQPK*GSSGRQNNWNFPIQALPRP 1035
            P+IIF+DEID              + EVQRT +   + +DGF+ +         N ++    A+ RP
Sbjct:  246 PAIIFIDEIDAVAAKRTDSKTSG-DAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRP 311

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 3.181e-38
Identity = 85/222 (38.29%), Postives = 123/222 (55.41%), Query Frame = 2

Query:  158 AEGLRQYYLQHIHELQLQVRQKTHNLNRLRAHRNELNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            ++ L  Y  +H +     VR     +  L     +L   +   K  L+ L  P      V+ ++   KV+V+       +V            P + VAL      +  +LP + D  V   +V + P+  Y  IGGL++QI EI+EVIELP+K+PELF+ +GI  PKGVLLYGPPGTGKTLLA+AVA  ++ TFI+V  SE  QK++GEG+R+ RE+F +A
Sbjct:    2 SDELDSYRAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELA 223

HSP 2 Score: 34.6538 bits (78), Expect = 3.181e-38
Identity = 20/50 (40.00%), Postives = 25/50 (50.00%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGF 960
            F   R  APSI+F+DEID              ERE+QRT +     +DGF
Sbjct:  220 FELARRKAPSIVFIDEID-AIGAKRVDMGTSGEREIQRTLMQLLAEIDGF 268

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.181e-38
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 2

Query:  287 KE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            +E ++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL+  S  L  ILP + D  +++++ ++ PD +Y  +GGLD Q +E++E +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+ T   FIRV GSE VQKY+GEG RM R++F MA
Sbjct:   45 QEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMA 223

HSP 2 Score: 37.7354 bits (86), Expect = 3.181e-38
Identity = 34/103 (33.01%), Postives = 45/103 (43.69%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGFNHQPK*GSSGRQNNWNFPIQALPRPETIWRK------------KLNFQTPTGK 1083
            F   RE+AP+IIF+DEID              +REVQR  ++  T +DGF+           N  +    AL RP  + RK            +L FQT T K
Sbjct:  220 FRMARENAPAIIFIDEID-AIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAK 321

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.364e-38
Identity = 80/231 (34.63%), Postives = 129/231 (55.84%), Query Frame = 2

Query:  140 RSIEDKAEGLRQYYLQHIHELQLQVRQKTHNLNRLRAHRNE---LNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            R ++ + + ++   L+  HELQ    +   N  +++ ++     +++ + +L       +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP+  D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++ R+ F +A
Sbjct:   49 RLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALA 278

HSP 2 Score: 38.5058 bits (88), Expect = 3.364e-38
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGF 960
            F   +E APSIIF+DE+D              +REVQRT L+    LDGF
Sbjct:  275 FALAKEKAPSIIFIDELD-AIGTKRFDSEKAGDREVQRTMLELLNQLDGF 323

HSP 3 Score: 25.409 bits (54), Expect = 3.364e-38
Identity = 13/45 (28.89%), Postives = 27/45 (60.00%), Query Frame = 3

Query:  942 HQLGWI*PPTKIRVLGTTKQLEFPNSSSSPARNYLEKKIEFPNPH 1076
            +QL    P T+++V+  T +++  + +   +   L++KIEFP P+
Sbjct:  318 NQLDGFQPNTQVKVIAATNRVDILDPALLRSGR-LDRKIEFPMPN 361

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.382e-38
Identity = 80/231 (34.63%), Postives = 130/231 (56.28%), Query Frame = 2

Query:  140 RSIEDKAEGLRQYYLQHIHELQLQVRQKTHNLNRLRAHRNE---LNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            R ++ + + ++   L+  HELQ    +   N  +++ ++     +++ + +L       +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++ R+ F +A
Sbjct:   11 RLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLA 240

HSP 2 Score: 38.1206 bits (87), Expect = 4.382e-38
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGF 960
            F   +E APSIIF+DE+D              +REVQRT L+    LDGF
Sbjct:  237 FSLAKEKAPSIIFIDELD-AIGNKRFDSEKAGDREVQRTMLELLNQLDGF 285

HSP 3 Score: 25.7942 bits (55), Expect = 4.382e-38
Identity = 13/45 (28.89%), Postives = 27/45 (60.00%), Query Frame = 3

Query:  942 HQLGWI*PPTKIRVLGTTKQLEFPNSSSSPARNYLEKKIEFPNPH 1076
            +QL    P T+++V+  T +++  + +   +   L++KIEFP P+
Sbjct:  280 NQLDGFQPTTQVKVIAATNRVDILDPALLRSGR-LDRKIEFPMPN 323

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.400e-38
Identity = 81/204 (39.71%), Postives = 116/204 (56.86%), Query Frame = 2

Query:  212 VRQKTHNLNRLRAHRNELNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            VR++   L R   H  E   RV+ +             +G+ ++ +  +  +V       +VV            P+T VAL   S  +  +LP +VD  + +M   + P  TY  +GGLD Q +EIKE +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+HT  TFIRV+GSE VQKY+GEG RM R++F +A
Sbjct:   30 VRKEIETLKREERHSREELDRVKSVP----------LIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLA 223

HSP 2 Score: 35.039 bits (79), Expect = 5.400e-38
Identity = 19/51 (37.25%), Postives = 27/51 (52.94%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGFN 963
            F   RE APSI+F+DE+D              +REVQR  ++    +DGF+
Sbjct:  220 FRLAREKAPSIVFIDEVD-SIATKRFDASTSADREVQRVLIELLNQMDGFD 269

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.193e-37
Identity = 78/217 (35.94%), Postives = 120/217 (55.30%), Query Frame = 2

Query:  173 QYYLQHIHELQLQVRQKTHNLNRLRAHRNELNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            Q  L+ +   +  ++ +  NL +   H  E   R++ +             +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP + D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RM R++F +A
Sbjct:   48 QQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIP----------LVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 254

HSP 2 Score: 35.039 bits (79), Expect = 1.193e-37
Identity = 29/88 (32.95%), Postives = 40/88 (45.45%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGFNHQPK*GSSGRQNNWNFPIQALPRPETIWRKKLNFQTP 1074
            F   +E+AP+IIF+DEID              +REVQR  L+    +DGF+           N  +    AL RP  + R K+ F  P
Sbjct:  251 FRLAKENAPAIIFIDEID-AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDR-KIEFPLP 336

[Close]

BLAST of DY305849 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.193e-37
Identity = 78/217 (35.94%), Postives = 120/217 (55.30%), Query Frame = 2

Query:  173 QYYLQHIHELQLQVRQKTHNLNRLRAHRNELNSRVRMLKE*LQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMDRELFVMA 823
            Q  L+ +   +  ++ +  NL +   H  E   R++ +             +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP + D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RM R++F +A
Sbjct:   48 QQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIP----------LVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 254

HSP 2 Score: 35.039 bits (79), Expect = 1.193e-37
Identity = 29/88 (32.95%), Postives = 40/88 (45.45%), Query Frame = 1

Query:  811 FCYGREHAPSIIFMDEIDXXXXXXXXXXXXXXEREVQRTKLDRPTSLDGFNHQPK*GSSGRQNNWNFPIQALPRPETIWRKKLNFQTP 1074
            F   +E+AP+IIF+DEID              +REVQR  L+    +DGF+           N  +    AL RP  + R K+ F  P
Sbjct:  251 FRLAKENAPAIIFIDEID-AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDR-KIEFPLP 336

The following BLAST results are available for this feature:

BLAST of DY305849 vs. ExPASy Swiss-Prot

BLAST of DY305849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 358


Match Name	E-value	Identity	Description
PRS6A_RAT	1.991e-38	34.63	26S protease regulatory subunit 6A OS=Rattus norve...	[more]
PRS6A_HUMAN	1.991e-38	34.63	26S protease regulatory subunit 6A OS=Homo sapiens...	[more]
PSMR1_HALSA	3.179e-38	36.64	Proteasome-activating nucleotidase 1 OS=Halobacter...	[more]
PSMR_SULTO	3.181e-38	38.29	Proteasome-activating nucleotidase OS=Sulfolobus t...	[more]
PRS6B_SCHPO	3.181e-38	41.34	26S protease regulatory subunit 6B homolog OS=Schi...	[more]
PRS6A_MOUSE	3.364e-38	34.63	26S protease regulatory subunit 6A OS=Mus musculus...	[more]
PR6AB_XENLA	4.382e-38	34.63	26S protease regulatory subunit 6A-B OS=Xenopus la...	[more]
PRS6B_ENCCU	5.400e-38	39.71	26S protease regulatory subunit 6B homolog OS=Ence...	[more]
PRS6B_RAT	1.193e-37	35.94	26S protease regulatory subunit 6B OS=Rattus norve...	[more]
PRS6B_MACFA	1.193e-37	35.94	26S protease regulatory subunit 6B OS=Macaca fasci...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAM2CD02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305849 ID=DY305849; Name=DY305849; organism=Citrus sinensis; type=EST; length=1166bp
CTTACCCGAACGAGACTTGATCCGAAAGAAAATTAAATTCGGAAGAAATC
GAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCA
GCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGA
AGACAAGGCAGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAAC
TCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTACGAGCC
CATCGTAACGAACTCAATTCGAGAGTGCGGATGCTTAAAGAATAATTACA
GCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGG
GAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTT
GATATTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGT
TGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAG
TAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACA
TATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGT
CATTGAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAG
CTCAACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGCAAAACA
CTGTTGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCATCAGGGT
TTCTGGTTCTGAATTAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGG
ATAGAGAACTTTTTGTTATGGCAGGGAACATGCTCCGTCTATCATTTTTA
TGGATGAAATTGACAGTATCGGATCTGGCCGAATGGGATCTGGCAGCGGA
AATGGTGAACGTGAGGTGCAGAGGACTAAGCTGGACCGGCCCACCAGCTT
GGATGGATTTAACCACCAACCAAAATAAGGGTCCTCGGGACGACAAAACA
ATTGGAATTTCCCAATTCAAGCTCTTCCCCGGCCCGAAACTATTTGGAGA
AAAAAATTGAATTTCCAAACCCCCACTGGAAAAAGTCCCGGCTTTGGAAT
TCCCTAAAAAATTTCTTCTCCAAAAAAAAAAGGAATTTTTATTGGGGGGG
GGCTTTTTATTTTTTT