DY305844

Overview
NameDY305844
Unique NameDY305844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1190
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305844 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 50.8322 bits (120), Expect = 1.195e-14
Identity = 51/210 (24.29%), Postives = 80/210 (38.10%), Query Frame = 2
Query:   77 VISLENIN-GAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRK--------CMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLP---QSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXGIEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQW 670
            V+SL  I+    R  +   I EA ++ GFF++VNHG+  + M  +E + +  +            E+R K    +R   G   +     +         P     +INE PD  +  R V+                      GI+  Y +    G N       +++YP CP PD   G   H D   +I L     V+GL++   G W
Sbjct:   32 VVSLPIIDLSCGRDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKP---NRLFSGATYDTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGN---VILNINHYPSCPNPDKALGQPPHCDR-NLITLLLPGAVNGLEVSYKGDW 234          

HSP 2 Score: 50.8322 bits (120), Expect = 1.195e-14
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  672 IDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLTSFYIPGSDAVIYPAPALPGKRS 875
            I V P  ++ VVN G Q+EV+TNG  KS+EHR ++ +    R S+ +F +P  + +I PA     K +
Sbjct:  235 IKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNS-ALARTSVATFIMPTQECLIGPAKEFLSKEN 301          
BLAST of DY305844 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.546e-14
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  470 GIEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWD*CAPI 688
            G+E+GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W   +P+
Sbjct:  212 GVERGYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPV 280          

HSP 2 Score: 46.2098 bits (108), Expect = 1.546e-14
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 3
Query:  678 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLTSFYIPGSDAVIYPAPA 857
            V P+  ++V+N+GD    ++NG+YKS  HR V     E R SL  F  P  D V+ P P+
Sbjct:  277 VSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of DY305844 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.546e-14
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  470 GIEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWD*CAPI 688
            G+E+GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W   +P+
Sbjct:  212 GVERGYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPV 280          

HSP 2 Score: 46.2098 bits (108), Expect = 1.546e-14
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 3
Query:  678 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLTSFYIPGSDAVIYPAPA 857
            V P+  ++V+N+GD    ++NG+YKS  HR V     E R SL  F  P  D V+ P P+
Sbjct:  277 VSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of DY305844 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.014e-14
Identity = 47/201 (23.38%), Postives = 82/201 (40.80%), Query Frame = 2
Query:  104 AERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTE-----VNDMDWESTFYVRHLPQSTI----NEVPDLDEEYRK---VMXXXXXXXXXXXXXXXXXXXXXXGIEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQW 670
            A  A +   + EACE+ GFF++VNHGI+ E +    R     +   + ++ + L       G  +       + + W+ T   R  P          V  L E++R+   V                       G+ + + ++ F G +      +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W
Sbjct:   53 AAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRW 249          

HSP 2 Score: 40.4318 bits (93), Expect = 2.014e-14
Identity = 23/61 (37.70%), Postives = 31/61 (50.82%), Query Frame = 3
Query:  678 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLTSFYIPGSDAVIYPAPAL 860
            + P   + VVN+GD    ++NG+YKS  HR V  +    R SL  F  P  D V+ P   L
Sbjct:  252 IRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTL 311          
The following BLAST results are available for this feature:
BLAST of DY305844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IDS3_HORVU1.195e-1424.292'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAOX2_ORYSJ1.546e-1435.62Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.546e-1435.62Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
GAO1D_WHEAT2.014e-1423.38Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CC06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305844 ID=DY305844; Name=DY305844; organism=Citrus sinensis; type=EST; length=1190bp
GCACATACACATACACAAACACTCACAAACACACAGCTTGTTAAAGAAAG
AATTCAGAGATATGGAGAACTTCCCCGTTATCAGCTTGGAGAACATCAAT
GGTGCTGAAAGAGCGGCTATCTTGGAGAAGATCAACGAGGCCTGTGAGAA
ATGGGGCTTCTTTGAGCTGGTGAATCATGGAATTGAGCCGGAGTTTATGG
ACACAGTGGAGAGATTGACCAAGGCGCATTACAGAAAATGCATGGAGCAA
AGATTCAAGGAGCTTGTTGCAAGCAGGGCACTTGAAGGTATCCAAACCGA
GGTCAATGACATGGACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTC
AGTCGACCATCAATGAAGTCCCAGATCTTGATGAGGAATACAGGAAGGTG
ATGAAGGAATTTGCATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGGA
CTTGTTATGCGAGAATCTTGGAATAGAGAAGGGGTACTTGAAAAAGGTCT
TTCATGGGGCAAACGGACCAACCTTTGGTACCAAAGTTAGCAACTACCCA
CCATGCCCCAAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGC
CGGCGGCATCATCTTGCTCTTCCAGGATGACAAAGTCAGTGGCCTTCAGC
TTCTTAAAGATGGCCAGTGGGATTGATGTGCCCCCATTGCGCCACTCCAT
TGTTGTCAACCTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACA
AGAGTGTGGAGCACAGAGTGGTTTCTCAAACCGACGGCGAGGGCCGGATG
TCCCTAACTTCATTCTACATCCCTGGAAGTGATGCTGTGATCTATCCAGC
ACCAGCATTGCCTGGAAAAAGAAGCTGAAAAAAAACAAGTGTACCCAAAA
ATTTGTTTTTAAGGAATACATGGAACCTCTATGGTTCCCCTCCAGTTTCC
GGCCCAAGGACCAAAAATTTTAAACCCATGAAAAGCTGTGGGAAACTAAA
TGGTTAACTTTTGGGCCCCAACCCCCACCCCCCTTAAACAAATATAGTGT
TAAACCCCAAAATAATTTTTTTAACCTGCCTGGGAGGGGGGGGGAACCAT
CCCATTTTTAAATTTATTTTGGAATAAAACCGTAAACACAAAAATGTTTA
ACTACCTCCGCGTGGGAAAAATAAAAATCCCTCCTTCCCC
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