DY305837

Overview
NameDY305837
Unique NameDY305837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1197
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_CAMJD (Transaldolase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tal PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.160e-23
Identity = 70/188 (37.23%), Postives = 106/188 (56.38%), Query Frame = 1
Query:  322 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLS-------RVTSVASFFVNRVDTLLD 864
            + L L++  + G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  + + NV IKIPAT      + E++  GISVN TLIFSL + ++  +A   GL     ++++          +V S FV+R D LL+
Sbjct:   19 EFLNLLSHEINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLN 202          
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_HELPY (Transaldolase OS=Helicobacter pylori GN=tal PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.039e-21
Identity = 71/201 (35.32%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  286 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVNRVDTLLDKCLEK 879
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VNVTL+FS           + G  A  L+  ++  +V S FV+R D  +D  + K
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAAKSIDEAKRLFKTLNRPNVMIKVPASESGIEVVSALTQASIPVNVTLVFS---------PKIAGEIAQILAKEAQKRAVISVFVSRFDKEIDPLVPK 193          
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_HELP2 (Transaldolase OS=Helicobacter pylori (strain P12) GN=tal PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.039e-21
Identity = 72/201 (35.82%), Postives = 104/201 (51.74%), Query Frame = 1
Query:  286 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVNRVDTLLDKCLEK 879
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E N  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS           + G  A  L+  ++  +V S FV+R D  +D  + K
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKNPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASTSGFEVISALAQASIPINVTLVFS---------PKIAGEIAQILAKEAQKRAVISVFVSRFDKEIDPLVPK 193          
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_HELPJ (Transaldolase OS=Helicobacter pylori J99 GN=tal PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.201e-20
Identity = 71/196 (36.22%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  286 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVNRVDTLLD 864
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS           + G  A  L+  +R  +V S FV+R D  +D
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESAFEVISALAQASIPINVTLVFS---------PKIAGEIAQILAKEARKRAVISVFVSRFDKEID 188          
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_HELPH (Transaldolase OS=Helicobacter pylori (strain HPAG1) GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.562e-20
Identity = 70/196 (35.71%), Postives = 103/196 (52.55%), Query Frame = 1
Query:  286 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVNRVDTLLD 864
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  I  +    I +NVTL+FS           + G  A  L+  ++  +V S FV+R D  +D
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESGLEVISALAQASIPINVTLVFS---------PKIAGEIAQILAKEAQKRAVISVFVSRFDKEID 188          
BLAST of DY305837 vs. ExPASy Swiss-Prot
Match: TAL_HELPS (Transaldolase OS=Helicobacter pylori (strain Shi470) GN=tal PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.782e-20
Identity = 71/203 (34.98%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  286 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS--LARYEEVIDAYLDGLEASGLSDLSRVTSVASFFVNRVDTLLDKCLEK 879
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VN TL+FS  +AR    I           L+  ++  +V S FV+R D  +D  + K
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAPKSIDEAKRLFKTLNRPNVMIKVPASESGLEVVSALTKASIPVNATLVFSPKIARKTAQI-----------LAKEAQKRAVISVFVSRFDKEIDPLVPK 193          
The following BLAST results are available for this feature:
BLAST of DY305837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_CAMJD1.160e-2337.23Transaldolase OS=Campylobacter jejuni subsp. doyle... [more]
TAL_HELPY7.039e-2135.32Transaldolase OS=Helicobacter pylori GN=tal PE=3 S... [more]
TAL_HELP27.039e-2135.82Transaldolase OS=Helicobacter pylori (strain P12) ... [more]
TAL_HELPJ1.201e-2036.22Transaldolase OS=Helicobacter pylori J99 GN=tal PE... [more]
TAL_HELPH4.562e-2035.71Transaldolase OS=Helicobacter pylori (strain HPAG1... [more]
TAL_HELPS7.782e-2034.98Transaldolase OS=Helicobacter pylori (strain Shi47... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CB07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305837 ID=DY305837; Name=DY305837; organism=Citrus sinensis; type=EST; length=1197bp
GCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAGCTTACAAATCC
AGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGC
CTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTT
GCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTT
GGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGA
CAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGAT
AACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGT
TAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCAT
CGAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGAT
ATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATG
CAAACTTTTTGAGTCAATCTATGATGAAACCAATGGCGGTGATGGCTATG
TTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACTGTG
GAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACAT
AAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTT
CGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCCTGGCTAGATAT
GAAGAAGTCATTGATGCTTACTTGGATGGCCTTGAGGCTTCTGGGCTGAG
TGACCTTTCCAGAGTTACAAGTGTTGCATCCTTTTTCGTTAATCGAGTAG
ACACCCTATTGGACAAATGCTTGGAAAAATTGGGAACCCAGAAACCCTAA
ATCTCCGAGGAAAAGCAACAATACCTCAGGCAACTCTAGCCTACCACCTG
TACCCAAAAAAATTTCCGGGGTCCAGAAGGGGACCCTCTTGGGAAAAAAG
GTGCCAAAAAAACAAAAAACTTCGGGTGGCCCTCAACCCATGGAAAAAAA
ATCCGGGCCAAACCCGACACCTCCCTATATGTTTGCTCCCTTTTCATTGA
AACACTAAAAAAGGGTTTTCAACCCCTGCCCCAAAAAACCACCCCCCCCC
CACACCATTTTTTTTTTTTAAATATTTGGGGGGGGCCCAATTTTTCT
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