DY305826

Overview
NameDY305826
Unique NameDY305826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1187
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.501e-11
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = -3 
Query:  424 LDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 765
            L+  E+      ++S V +  +  F+PEFLNR+D++I+F+ LT  ++K I + +++E+  RL  ++I +            E Y+P YGARPL+R I+R +E  +A ++++ +I
Sbjct:  732 LERTEEGEISPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDDAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKI 845
[Close]
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.501e-11
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = -3 
Query:  424 LDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 765
            L+  E+      ++S V +  +  F+PEFLNR+D++I+F+ LT  ++K I + +++E+  RL  ++I +            E Y+P YGARPL+R I+R +E  +A ++++ +I
Sbjct:  732 LERTEEGEISPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKI 845
[Close]
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.501e-11
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = -3 
Query:  424 LDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 765
            L+  E+      ++S V +  +  F+PEFLNR+D++I+F+ LT  ++K I + +++E+  RL  ++I +            E Y+P YGARPL+R I+R +E  +A ++++ +I
Sbjct:  732 LERTEEGEISPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKI 845
The following BLAST results are available for this feature:
BLAST of DY305826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPB_LISMO8.501e-1132.46Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_LISMF8.501e-1132.46Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_LISIN8.501e-1132.46Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305826 ID=DY305826; Name=DY305826; organism=Citrus sinensis; type=EST; length=1187bp
ATCATTCAAATCCTTCTCTGATTAAGAAGAAAGCAAATAATGATGAGAAC
TGAATAATAATAATAATAACAATATGAAACCTAACACTAGCAACTGACTG
CAACTTTCCCACTATCTGCTGCTACTGAACTGAACCGTGTACTCTATTTT
CATATGGTGTCACGAATACAGCCTTAAAACCCAACCACCACCGATTTAAT
CAACAGCTTCCAAATCTACTGCCAAGTAGTCCTTCCAAGAAAACAGACTG
AGTATCTAGCCAGTTGAAATCAAAATGGAAGTACAAACAACATCTCAAAA
TAGATGATCAGTTTACACAACAGGTAGTGGATCTGCCAATGATTCTGGAG
CACCACTGCTGCCGTTGAGCACAGTCACGTTCCCATCAGAATCGACATCA
ACGATGACCGAATCACCCTCTTTGATCTCTCTTGCAAGCATCTTCTCAGC
CATGCTGTCTTCCAAAAGTCTCATAATGGCTCTTCTCAATGGCCTTGCTC
CATAGCTTGGGTTATAACCTTCCTCAACCACCCTCTCCCTAAATCTCTCT
GTCACTTGAAGCTCAATATCTTTTGTCTTGAGTCTATCAAACACCTCCTT
CAGCATTATATCAGCGATCTCTTTAACCTCCAGCTTGGTGAGTTGTCGGA
AAACAATCATCTCATCCAATCTATTCAAGAACTCTGGCCTGAAGTACTGC
TTNCATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTGTCTTT
CTCATCATAATCAAGATCAAAACAAATGCGGCGTCCTCCCTTCCCTCGTG
CGAATTCGGCACGAGGGACAACATATGGGATTTAAATCATTTGGGACTGA
AAAATACATCAAGGGAGACGAAATTAAAACTCCCGAACTGGATCTCCAAA
TTATCCTAATTCGGGAGGCCAACATTTAAATCCAACTAAAAAAAACCGAA
CAAAATTACTGAAAAAAATTCTGTCCCTTTTTCCGTTAAAAAATCCAAAA
TTTGGGGGAACCCCATTGAATGGGGGGAAAAATTTTTTGGGGCCCAAAAA
CCAAATTTTTAAATTCTTTTTACGGGGGAATGTCCCCCGGGGGAAATAAA
GGGAATTTTTTGTGGTTGGTTTTTTTTTTAAAAAATAAAAAAAGGGGGGA
ATAATTTTTTTTTTTTTTCCTTTTTCTTTTCTAACCC
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