DY305826

Overview
NameDY305826
Unique NameDY305826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1187
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.017e-16
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  424 IKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 729
            I+  V  E K  F+PEFLNR+D++I+FR L+   +K+I DI L++V +RL+ ++I L+           EGY+P YGARPL+R I  +LE  +A+K++A EI
Sbjct:  745 IRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEI 846          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.017e-16
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  436 LDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKML 765
            LD    DS Y  ++  V +  ++YFRPEFLNR+D++I+F  L + E+ +IA I L+ V   L  + I L+            G++P YGARPL+RAI R LE+ +A K+L
Sbjct:  740 LDLAADDSRYEEMRQRVLQSAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPAALDHLVAVGFDPVYGARPLKRAIQRELENPLAVKLL 849          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.940e-16
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = -3
Query:  433 DLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 768
            +L  D+    Y ++K+ V    + +FRPEF+NRLD+++VF  L K ++K+IA I L+ +  RL   +++L             G++P YGARPL+RAI   LE+++A+++LA
Sbjct:  727 ELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILA 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.146e-16
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  436 DYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKML 762
            D   ++   N IK++V  E K++F+PEFLNRLDE+I+F+ L   E+K+IA + LK++ +RL  KD+  Q             ++ SYGARPL+R I + +E  +A  +L
Sbjct:  730 DLSIRNEDKNEIKNIVNVELKKFFKPEFLNRLDEIIIFQNLELNELKDIAKLQLKKLENRLIKKDLNFQITDEAIDHLVKNSFDNSYGARPLKRIIQKEIETKIANNIL 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.146e-16
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  418 EKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 753
            +   SY  I+  V    +Q+FRPEFLNRLDE++VFR L + ++  I  I L+ V  RL  + I L+            GY+P +GARPL+R I R LE  ++ K+LA E+ +
Sbjct:  720 QSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVAD 831          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.720e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = -3
Query:  424 YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 738
            Y  IKS V +   ++FRPEFLNR+DE++VF  L +  +K IA I L+ +  RL+ K  +L+            G++P YGARPL+RAI + +E+ +A+ +LA EI
Sbjct:  734 YQGIKSEVMDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEI 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 6.720e-16
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  433 DSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 747
            + SY  +KS V E    +FRPEF+NR+DE IVF  L K  +  IA I L+ +  RL+T+++ L             GY+P +GARPL+RAI   +E+ +A+ +LA
Sbjct:  735 EKSYEEMKSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDAINQLVELGYDPLFGARPLKRAIQNYIENPLAQALLA 839          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 6.720e-16
Identity = 44/115 (38.26%), Postives = 70/115 (60.87%), Query Frame = -3
Query:  418 DYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 762
            D D+ DS    ++ LV E  + +FRPEFLNR+D++I+F +L + E+  I +I LK +   L  + I L+           +GY+P+YGARPL+R I + ++D +AE +L  EI +
Sbjct:  732 DNDDVDS----VRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPD 842          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.777e-16
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  424 YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 738
            Y R+K +V     Q FRPEF+NR+DE++VF  L +  +  IA I L+ ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  734 YGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.777e-16
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  424 YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 738
            Y R+K +V     Q FRPEF+NR+DE++VF  L +  +  IA I L+ ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  734 YGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
The following BLAST results are available for this feature:
BLAST of DY305826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPB_CLOPE3.017e-1644.12Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB2_THEEB3.017e-1640.91Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_XYLFT3.940e-1637.50Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_PROMP5.146e-1639.45Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_MEIRU5.146e-1640.18Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_VIBPA6.720e-1641.90Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_DICNO6.720e-1640.95Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_AGRT56.720e-1638.26Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_SALTY8.777e-1638.10Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI8.777e-1638.10Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305826 ID=DY305826; Name=DY305826; organism=Citrus sinensis; type=EST; length=1187bp
ATCATTCAAATCCTTCTCTGATTAAGAAGAAAGCAAATAATGATGAGAAC
TGAATAATAATAATAATAACAATATGAAACCTAACACTAGCAACTGACTG
CAACTTTCCCACTATCTGCTGCTACTGAACTGAACCGTGTACTCTATTTT
CATATGGTGTCACGAATACAGCCTTAAAACCCAACCACCACCGATTTAAT
CAACAGCTTCCAAATCTACTGCCAAGTAGTCCTTCCAAGAAAACAGACTG
AGTATCTAGCCAGTTGAAATCAAAATGGAAGTACAAACAACATCTCAAAA
TAGATGATCAGTTTACACAACAGGTAGTGGATCTGCCAATGATTCTGGAG
CACCACTGCTGCCGTTGAGCACAGTCACGTTCCCATCAGAATCGACATCA
ACGATGACCGAATCACCCTCTTTGATCTCTCTTGCAAGCATCTTCTCAGC
CATGCTGTCTTCCAAAAGTCTCATAATGGCTCTTCTCAATGGCCTTGCTC
CATAGCTTGGGTTATAACCTTCCTCAACCACCCTCTCCCTAAATCTCTCT
GTCACTTGAAGCTCAATATCTTTTGTCTTGAGTCTATCAAACACCTCCTT
CAGCATTATATCAGCGATCTCTTTAACCTCCAGCTTGGTGAGTTGTCGGA
AAACAATCATCTCATCCAATCTATTCAAGAACTCTGGCCTGAAGTACTGC
TTNCATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTGTCTTT
CTCATCATAATCAAGATCAAAACAAATGCGGCGTCCTCCCTTCCCTCGTG
CGAATTCGGCACGAGGGACAACATATGGGATTTAAATCATTTGGGACTGA
AAAATACATCAAGGGAGACGAAATTAAAACTCCCGAACTGGATCTCCAAA
TTATCCTAATTCGGGAGGCCAACATTTAAATCCAACTAAAAAAAACCGAA
CAAAATTACTGAAAAAAATTCTGTCCCTTTTTCCGTTAAAAAATCCAAAA
TTTGGGGGAACCCCATTGAATGGGGGGAAAAATTTTTTGGGGCCCAAAAA
CCAAATTTTTAAATTCTTTTTACGGGGGAATGTCCCCCGGGGGAAATAAA
GGGAATTTTTTGTGGTTGGTTTTTTTTTTAAAAAATAAAAAAAGGGGGGA
ATAATTTTTTTTTTTTTTCCTTTTTCTTTTCTAACCC
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