DY305826

Overview
NameDY305826
Unique NameDY305826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1187
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.816e-14
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  424 EKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 753
            ++D    ++K  V E  K  F+PEFLNRLDE+I+F +L +  + +I  I L+ +   L  ++I L+           +GY+PS+GARPL+R I R +++++A+ +LA EI
Sbjct:  728 KEDEDTYKVKDEVMEYVKAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEI 837          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.816e-14
Identity = 37/106 (34.91%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  424 SYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 741
            +Y+ +K +V       FRPEF+NR+DE +VF  L +  +  IADI L+ ++ RL+ +  ++             G++P YGARPL+RAI + +E+ +A+K+L+ ++
Sbjct:  733 NYDEMKDIVMGIVSHNFRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQL 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.215e-14
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  424 EKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 753
            E + +Y ++K  V E  K  F+PEFLNRLDE+I+F +L +  + +I  I L+ +   L  ++I L+           +GY+PS+GARPL+R I R +++++A+ +LA E+
Sbjct:  729 EGEDTY-KVKDQVMEYVKMVFKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEV 837          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.215e-14
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  436 IKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKML 729
            IK  V +E K +FRPEFLNR+DE++VF  L +  ++ IA I L+ +  RL   D+ L+            GY+P +GARPL+RAI + +E+ +A  +L
Sbjct:  739 IKGAVWQEVKTHFRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISDPAVAKLASAGYDPVFGARPLKRAIQQQIENPVARMIL 836          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.215e-14
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  436 YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKML 738
            Y  IK  V  E K YFRPEF+NR+DE++VF  L +  +K IA I L  +  RL   +++L             G++P +GARPL+RAI   +E+ +A+++L
Sbjct:  738 YQVIKLAVMGEVKTYFRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSEPALTKLAEVGFDPVFGARPLKRAIQAQIENPLAKELL 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.073e-13
Identity = 35/104 (33.65%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  418 IKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 729
            ++  V EE +++FRPEFLNR+DE ++F+ L   ++  I +++L  +  RL  + I+++             Y+P YGARPLRR +   +E  +A K++A E+++
Sbjct:  744 VREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRD 847          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.073e-13
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  424 LDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 765
            L    K+      K  V    K+  RPEFLNR+DE I+F  LT+ E+++I  + +K V   L    +EL+            GY+P +GARP++RAI R L + +++K+L++E+
Sbjct:  730 LSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEV 843          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.401e-13
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  424 YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 738
            Y  IK  V E   ++FRPEFLNR+DE +VF  L +  +K IA I L  + +R++     L+            G++P YGARPL+RAI + +E+ +A+ +LA  +
Sbjct:  734 YQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSV 838          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.401e-13
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = -3
Query:  418 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 702
            K  F+PEF+NRLD+++VF  L++ ++  I +I + ++ +RL  + + L+            GY+P+YGARPLRR I + + D +A+++LA EI++
Sbjct:  737 KMAFKPEFINRLDDIVVFDPLSQEQLASIVEIQISQLAERLSDRRLTLRVSDAAKLWLAERGYDPAYGARPLRRLIQQAIGDQLAKELLAGEIRD 831          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.401e-13
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  418 EKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 753
            E  +S    K  V E  +  F+PEFLNRLD+++VF  L + E++ IA + +  +  RL  + + L+           EG +P+YGARPLRR +   + D +A+++LA E+K+
Sbjct:  736 EPQTSEEEKKRQVLEVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKD 847          
The following BLAST results are available for this feature:
BLAST of DY305826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPB_RICCN4.816e-1437.27Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_PHOLL4.816e-1434.91Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_RICBR8.215e-1437.27Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB_RALSO8.215e-1440.82Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_NITEU8.215e-1439.60Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_DESVH1.073e-1333.65Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_BACTN1.073e-1335.09Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_VIBVU1.401e-1338.10Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_COREF1.401e-1336.84Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB1_STRAW1.401e-1335.71Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305826 ID=DY305826; Name=DY305826; organism=Citrus sinensis; type=EST; length=1187bp
ATCATTCAAATCCTTCTCTGATTAAGAAGAAAGCAAATAATGATGAGAAC
TGAATAATAATAATAATAACAATATGAAACCTAACACTAGCAACTGACTG
CAACTTTCCCACTATCTGCTGCTACTGAACTGAACCGTGTACTCTATTTT
CATATGGTGTCACGAATACAGCCTTAAAACCCAACCACCACCGATTTAAT
CAACAGCTTCCAAATCTACTGCCAAGTAGTCCTTCCAAGAAAACAGACTG
AGTATCTAGCCAGTTGAAATCAAAATGGAAGTACAAACAACATCTCAAAA
TAGATGATCAGTTTACACAACAGGTAGTGGATCTGCCAATGATTCTGGAG
CACCACTGCTGCCGTTGAGCACAGTCACGTTCCCATCAGAATCGACATCA
ACGATGACCGAATCACCCTCTTTGATCTCTCTTGCAAGCATCTTCTCAGC
CATGCTGTCTTCCAAAAGTCTCATAATGGCTCTTCTCAATGGCCTTGCTC
CATAGCTTGGGTTATAACCTTCCTCAACCACCCTCTCCCTAAATCTCTCT
GTCACTTGAAGCTCAATATCTTTTGTCTTGAGTCTATCAAACACCTCCTT
CAGCATTATATCAGCGATCTCTTTAACCTCCAGCTTGGTGAGTTGTCGGA
AAACAATCATCTCATCCAATCTATTCAAGAACTCTGGCCTGAAGTACTGC
TTNCATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTGTCTTT
CTCATCATAATCAAGATCAAAACAAATGCGGCGTCCTCCCTTCCCTCGTG
CGAATTCGGCACGAGGGACAACATATGGGATTTAAATCATTTGGGACTGA
AAAATACATCAAGGGAGACGAAATTAAAACTCCCGAACTGGATCTCCAAA
TTATCCTAATTCGGGAGGCCAACATTTAAATCCAACTAAAAAAAACCGAA
CAAAATTACTGAAAAAAATTCTGTCCCTTTTTCCGTTAAAAAATCCAAAA
TTTGGGGGAACCCCATTGAATGGGGGGAAAAATTTTTTGGGGCCCAAAAA
CCAAATTTTTAAATTCTTTTTACGGGGGAATGTCCCCCGGGGGAAATAAA
GGGAATTTTTTGTGGTTGGTTTTTTTTTTAAAAAATAAAAAAAGGGGGGA
ATAATTTTTTTTTTTTTTCCTTTTTCTTTTCTAACCC
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