DY305808

Overview
NameDY305808
Unique NameDY305808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1263
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 127.872 bits (320), Expect = 1.278e-28
Identity = 77/196 (39.29%), Postives = 104/196 (53.06%), Query Frame = 3
Query:  135 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEWGPRLSEH---RWKVKNW 692
            LP+LPY Y ALEP I  E M +HH KHH  YVTN NKAVE      NK     V  L         A++ NGGGH NH +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A  A   GSGW WL ++    +L + +T NQD  +++     P+ G++VWE    Y   +  R  ++    W V NW
Sbjct:    5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNN--GKLEITSTPNQDSPLSEGK--TPILGLDVWE--HAYYLNYQNRRPDYISAFWNVVNW 191          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.669e-28
Identity = 73/199 (36.68%), Postives = 110/199 (55.28%), Query Frame = 3
Query:  126 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEWGPRLSEH---RWKVKNW 692
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V        +++GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++     P+ G++VWE    Y  ++  R  E+    W V NW
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSEGK--TPVLGLDVWE--HAYYLKFQNRRPEYIDTFWNVINW 191          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.847e-28
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 3
Query:  132 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPC-LVPLRGINVWE 623
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPL  +++WE
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWE 163          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.847e-28
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 3
Query:  132 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPC-LVPLRGINVWE 623
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPL  +++WE
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWE 163          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.718e-28
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 3
Query:  135 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPCL---VPLRGINVWELVTTYVTEWGPRLSEH---RWKVKNWRLAIE 707
            LP LPYDY +LEP +    M +HH KHHQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+  FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PL G++VWE    Y  ++  R  E+    W V NW    E
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPD-GSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWE--HAYYLKYQNRRPEYIAAWWNVVNWEQVAE 206          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_PALVU (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Palinurus vulgaris PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.856e-28
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  177 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINV 617
            IS  IMQ+HH KHHQAY+ N     E+L QA    D + +  L  AIKFNGGGH+NH+IFW N+AP    GGEP    +  AI   FGS +A   K S     ++GSGW WLG   +  +L V T  NQDPL      L+PL G++V
Sbjct:    2 ISEMIMQIHHTKHHQAYINNLKACTEKLKQAEQANDVAAMNALLPAIKFNGGGHINHTIFWTNMAP--SAGGEPA-GPVADAITKEFGSFQAFKDKFSTASVGVKGSGWGWLGYCPKNDKLAVATCQNQDPL-QLTHGLIPLLGLDV 144          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 4.856e-28
Identity = 82/205 (40.00%), Postives = 108/205 (52.68%), Query Frame = 3
Query:  132 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPCLV---PLRGINVWELVTTYVTEWGPRLSEHR---WKVKNW 692
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +  +  +L V +TANQD PL+ +A   V   P+ G++VWE    Y   +  R  ++    W V NW
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV--KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWE--HAYYLNYQNRRPDYLAAFWNVVNW 200          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.856e-28
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 3
Query:  135 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEWGPRLSEH---RWKVKNWRLA 701
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+     P+ G++VWE    Y   +  R  ++    W V +W  A
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNN--GELEVTSTPNQDSPLTEGK--TPVIGLDVWE--HAYYLNYQNRRPDYIGAFWNVVDWNAA 195          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.413e-27
Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  132 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPCLVPLRGINVWE 623
            TLP LPY Y ALEP I  + M++HH KHHQ YV   N A          VE+L  A+ ++  S    L+GA+  +GGGH NHS+FW  ++P  +GGGE PH  L  AI +  G  +A  +  +       GSGW WL + T  K LVVE++ NQD PL+       P+ G++VWE
Sbjct:    4 TLPALPYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWPVEKLVGAVKQLPES----LRGAVTNHGGGHANHSLFWTVMSP--QGGGE-PHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGN---TPIFGLDVWE 167          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.845e-27
Identity = 75/199 (37.69%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  126 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEWGPRLSEH---RWKVKNW 692
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV       E+  + L     S    ++GA++ +GGGH NH++FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++      P+ G++VWE    Y  ++  R  E+    W V NW
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSDGK--TPVLGLDVWE--HAYYLKFQNRRPEYIDTFWNVVNW 191          
The following BLAST results are available for this feature:
BLAST of DY305808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_BACSU1.278e-2839.29Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_LISIV1.669e-2836.68Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODF_MYCTU2.847e-2843.03Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO2.847e-2843.03Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM_CHLRE3.718e-2837.20Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_PALVU4.856e-2846.94Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_DEIRA4.856e-2840.00Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM1_BACAN4.856e-2837.93Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_PSEPU1.413e-2742.29Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_LISIN1.845e-2737.69Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305808 ID=DY305808; Name=DY305808; organism=Citrus sinensis; type=EST; length=1263bp
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACCAAAGCCCCATGTCTGGTTCCTT
TGCGAGGTATAAATGTTTGGGAGCTGGTTACTACCTACGTTACAGAATGG
GGACCGAGATTATCTGAACACAGGTGGAAAGTAAAGAACTGGAGGTTGGC
TATTGAATGTGTATCAAAAGAAATGCCCAAAAACTTGAACGTGCCGCCCT
GGCGGGAAGTACGCGTGTGCTGTAGGGGTTCCCCTTGGGATGGGAGAGCG
AGGCCCGGGGGGGTCGGGAAAAAAAGGGCAGGTAAACGGATATATTGGGA
TGAAGACAACCCCCTCTTTGATGGTTGGGAGGCAGGCAAGAGTGCCCGTA
CCGTCGCCCTATGACCACAAGTGGGGCCGAGGCGTAGCCAAATTCGCCAC
GGATAGGGGAAGAAAGCTGGTGAGGGGGAGGAGGTGAATCCTTTGTGTAA
TGGACGTGCAGCAGTGAGGATAGGGGGGTGGGATTCTGGACAGTCAAGAT
GTATAGGAATAGGATAGGGGGGGGCAGAGAAAAGGATACGAGAGTTGATA
AGGTAATTGTGAAAGAAGATGATGATCAAGATTATGAGAGAAAACGCGGC
AAACTCAGGGATGGACATGAGGGGACACTAAAGGGGAAAGCTAGAAAGAT
TATGAGTCAGATGGAGAGGGTGCAAGGAGCGCATATACTGAATACAGCAT
GTTGCACTGATGA
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