DY305782

Overview
NameDY305782
Unique NameDY305782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BORPA (Indole-3-glycerol phosphate synthase OS=Bordetella parapertussis GN=trpC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.475e-37
Identity = 92/215 (42.79%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  101 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL----EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 733
            G   +IAE+KKASPS+G+LRE+FDP EIA SY   GAACLS+LTD ++F+GS +NL   R+A    P+L K+FI+D +QI  AR  GA+ VLLI A L    +R +  +   LG+  LVEVHD +E+D                   TFE  +  T  LL     G+R          VV ESG+  P+D+  ++E  V+A LVGE+ ++ +DPG
Sbjct:   52 GKAGVIAEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSHDNLRRARAA-CSLPVLRKDFIIDPYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELD-AALALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKR----------VVTESGILKPEDVRLMREHDVQAFLVGEAFMRANDPG 254          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BORBR (Indole-3-glycerol phosphate synthase OS=Bordetella bronchiseptica GN=trpC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.475e-37
Identity = 92/215 (42.79%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  101 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL----EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 733
            G   +IAE+KKASPS+G+LRE+FDP EIA SY   GAACLS+LTD ++F+GS +NL   R+A    P+L K+FI+D +QI  AR  GA+ VLLI A L    +R +  +   LG+  LVEVHD +E+D                   TFE  +  T  LL     G+R          VV ESG+  P+D+  ++E  V+A LVGE+ ++ +DPG
Sbjct:   52 GKAGVIAEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSHDNLRRARAA-CSLPVLRKDFIIDPYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELD-AALALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKR----------VVTESGILKPEDVRLMREHDVQAFLVGEAFMRANDPG 254          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BACME (Indole-3-glycerol phosphate synthase OS=Bacillus megaterium GN=trpC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.475e-37
Identity = 92/233 (39.48%), Postives = 138/233 (59.23%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            R F+ AL   N+     ALIAEVKKASPS+G+++E+F PVEIA++YEKG A  LS+LTD+ YF+G    L  ++   V  P+L K+FI+D+ Q+  +   GA+A+LLI   L  L ++ +        L  LVEVH    ++++                 TFE  +  TK++ +         K+ ++V ESG++  DD++YV+EAG KA+LVGES+++QD+  K I  LFG
Sbjct:   27 RSFLDALSNPNREL---ALIAEVKKASPSKGLIKENFQPVEIAKAYEKGKADALSVLTDQHYFQGHRTFLSDIKQ-HVSVPVLRKDFIIDSIQVEESARIGADAILLIGEALEPLKLQELYLQAAEKELDCLVEVHSLETLEKLLAVFTPKIIGINNRNLHTFETSLQQTKEIAKHV------PKDQLLVSESGIYLYDDVSYVKEAGAKAILVGESLMRQDNQTKAIEKLFG 249          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PSE14 (Indole-3-glycerol phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.762e-37
Identity = 92/232 (39.66%), Postives = 136/232 (58.62%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            R F  AL+    R  LPA+IAEVKKASPS+G++RE+F P EIARSY+ GGA CLS+LTD  +F+GS   L+  R+A    P++ K+F++D +Q+  AR  GA+ +LLI + L D  +  + ++ K +GL  LVEVHD  E++R                  TFEV +  T +LL      I R +  +V+ ESG+    D+  ++   V + LVGE+ ++ + PG  +  LF
Sbjct:   41 RGFANALIT-QARLKLPAVIAEVKKASPSKGVIRENFLPGEIARSYQAGGATCLSVLTDVDFFQGSDAYLQEARAA-CNLPVIRKDFMIDPYQVVEARALGADCILLIVSALEDGQMAELADVAKRVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLELLP----RIPRDR--LVITESGILNRADVELMEINDVYSFLVGEAFMRAEHPGAELLRLF 264          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BRAJA (Indole-3-glycerol phosphate synthase OS=Bradyrhizobium japonicum GN=trpC PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 9.762e-37
Identity = 92/241 (38.17%), Postives = 141/241 (58.51%), Query Frame = 2
Query:   14 AIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTK---KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            +++ A      AP  R F+ A+ A +   G  ALIAEVKKASPS+G++R DFDP ++A++YE GGAACLS+LTD   F+G  + + A R+A    P+L K+F+ DA+Q+  AR  GA+ +L+I A L D   + + +     G+  L+E+HD  E+DR                  TFE  ++ ++    L+ G+R         ++VGESG+FTP D+A ++  G+   LVGES+++Q D
Sbjct:   26 SVVEATAKAQGAP--RGFLRAIKAKHTN-GDFALIAEVKKASPSKGLIRADFDPPQLAKAYEAGGAACLSVLTDTPSFQGHLDFMVAARAA-TSLPVLRKDFMFDAYQVVEARAHGADCILIIMAALDDATAKDLEDTAIAFGMDVLIEIHDRAELDRA-LKLRSPMIGVNNRNLRTFETTLATSEALAPLIPGDR---------LMVGESGIFTPADLARLERVGMSTFLVGESLMRQAD 252          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_DESRM (Indole-3-glycerol phosphate synthase OS=Desulfotomaculum reducens (strain MI-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.275e-36
Identity = 94/231 (40.69%), Postives = 138/231 (59.74%), Query Frame = 2
Query:   50 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 742
            PPARDF  AL   NQ  G  +LIAE+KKASPS+G+L  +FD  ++A  Y+  GAA LS+LTDE +F G    LE ++      PLL K+FI+D  Q+Y +R  GA+AVLLIA +L   ++  +  +C+ +G+ ALVEVH + E+ RV                 TF+ +++ T KLLE      ++ ++I +V ESG+   +DI +++  GV  VLVGE++V   D  K +
Sbjct:   34 PPARDFRKALY--NQ--GQVSLIAEIKKASPSKGLLCPNFDHRQLAHIYQSNGAAALSVLTDENFFLGKLTYLEEIKQQS-SLPLLRKDFILDPVQLYQSRLAGADAVLLIAGLLTPGELSQLFLLCREIGMQALVEVHTQEELQRV-LTTDAKLIGINNRDLSTFQTNLATTAKLLEQ-----VQIEDITIVSESGIAQKEDIKFLKSLGVHGVLVGEALVTAQDIAKKV 253          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURTA (Indole-3-glycerol phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.275e-36
Identity = 98/237 (41.35%), Postives = 137/237 (57.81%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A  +RDF+GAL   +   G  A+IAEVKKASPS+G+LRE F P +IARSY + GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVD +Q+  AR  GA+A+LLIAA L    +  +      LGL  LVEVH+  E+                    TFE  I  T  +L+          + IVV ESG+ +  D+  ++ AGV   LVGE+ ++ ++PG  +  +F
Sbjct:   33 SARDSRDFVGALRGKHA-AGHAAVIAEVKKASPSKGVLRERFVPADIARSYAEHGAACLSVLTDEQFFQGSARYLEEARAA-CNLPVLRKDFIVDPYQVLEARAMGADAILLIAAALDTPLMVDLEAYAHSLGLAVLVEVHNRDELS-AALELKTPLVGINNRNLRTFETTIDTTLGMLDA------IPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BRUSU (Indole-3-glycerol phosphate synthase OS=Brucella suis GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.275e-36
Identity = 91/229 (39.74%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   41 DNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            D + P R F+ AL  A +  G  ALIAE+KKASPS+G++R DFDP  +A++YE+GGAACLS+LTD   F+G+ E L A R A    P L K+F+ D +Q+Y AR+ GA+ +L+I A + D   + + +    LG+ AL+EVHDE EM+R                  +FEV+++ +++L +      +   + ++VGESG+FT +D   ++++G+   L+GES+++Q D
Sbjct:   35 DQSAP-RGFLKAL-EAKRAAGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHD 253          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BRUSI (Indole-3-glycerol phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.275e-36
Identity = 91/229 (39.74%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   41 DNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            D + P R F+ AL  A +  G  ALIAE+KKASPS+G++R DFDP  +A++YE+GGAACLS+LTD   F+G+ E L A R A    P L K+F+ D +Q+Y AR+ GA+ +L+I A + D   + + +    LG+ AL+EVHDE EM+R                  +FEV+++ +++L +      +   + ++VGESG+FT +D   ++++G+   L+GES+++Q D
Sbjct:   35 DQSAP-RGFLKAL-EAKRAAGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHD 253          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BRUME (Indole-3-glycerol phosphate synthase OS=Brucella melitensis GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.275e-36
Identity = 91/229 (39.74%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   41 DNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            D + P R F+ AL  A +  G  ALIAE+KKASPS+G++R DFDP  +A++YE+GGAACLS+LTD   F+G+ E L A R A    P L K+F+ D +Q+Y AR+ GA+ +L+I A + D   + + +    LG+ AL+EVHDE EM+R                  +FEV+++ +++L +      +   + ++VGESG+FT +D   ++++G+   L+GES+++Q D
Sbjct:   35 DQSAP-RGFLKAL-EAKRAAGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHD 253          
The following BLAST results are available for this feature:
BLAST of DY305782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TRPC_BORPA7.475e-3742.79Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_BORBR7.475e-3742.79Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_BACME7.475e-3739.48Indole-3-glycerol phosphate synthase OS=Bacillus m... [more]
TRPC_PSE149.762e-3739.66Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_BRAJA9.762e-3738.17Indole-3-glycerol phosphate synthase OS=Bradyrhizo... [more]
TRPC_DESRM1.275e-3640.69Indole-3-glycerol phosphate synthase OS=Desulfotom... [more]
TRPC_BURTA1.275e-3641.35Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BRUSU1.275e-3639.74Indole-3-glycerol phosphate synthase OS=Brucella s... [more]
TRPC_BRUSI1.275e-3639.74Indole-3-glycerol phosphate synthase OS=Brucella s... [more]
TRPC_BRUME1.275e-3639.74Indole-3-glycerol phosphate synthase OS=Brucella m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305782 ID=DY305782; Name=DY305782; organism=Citrus sinensis; type=EST; length=1262bp
GAAAACAGAGGAGGCCATTATCTATGCTCAAAATGCCCTTGACAATGCTC
CTCCAGCTAGAGATTTCATTGGAGCTCTTATGGCTGCCAATCAACGAACT
GGACTTCCTGCTCTGATTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAGG
AATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAGA
AAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAAG
GGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCCC
CCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCCC
GAACTAAAGGTGCAAATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGAT
CTTGATATCAGATACATGACTAACATCTGCAAGATGCTTGGTTTGACTGC
ACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATTG
AGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGAG
GTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAAT
AATCCGTCAAAAGAACATAATTGTGGTTGGTGAATCTGGGCTATTTACTC
CCGATGATATCGCATACGTACAAGAAGCTGGTGTTAAAGCTGTTCTGGTT
GGGGAGTCAATAGTGAAGCAAGACGACCCCGGGAAGGGAATAACTGGACT
TTTTGGAACACACATTTCTGTATGAGCTCCTATTTTATTGTTTCTCAGAG
TGTTCGGGTGAATGTTATTCAGATGAAAGATGAGTAAAGTCACCTTTTGA
TCAATCATTAAATATACCGTCCCCCTTATTGTATTCTATAACCCTATTTC
CTTTTCCTTTTGAATTTGGTAACTTTCACTAATGAAATAGAAAAAAAGAA
TTGAACCTGAATAGAATGGGTAATTGTTTGAAGGGATTGAAAAAAAAAAA
AAAAAAAAATGGGGGTCCCCCCGCCTTTTTCCCGGCGAAAAAAAAAAACA
AAAAAAAAGAAACCCCGGAGGGGGGGGGCCGGGAAACCCCCTTTCCCCCC
CCAATATTTTGGTTTCGTAATTTAAAATTTTCCACGGGGGGCCCCCCCTT
TTTTTTAAAACCCCCCTCGGGGGAGGAGGGGAAAAAAAAACCCCTTGGGG
GTGTTTTCTCCCCAACATTTTTTTATACCCCCCCCCCTCTTTAGAACCCC
CCCCCCCCCCCC
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