DY305782

Overview
NameDY305782
Unique NameDY305782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROMM (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpC PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.895e-50
Identity = 108/241 (44.81%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   29 QNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 751
            ++ + + P  RDFI AL  A++    PA+IAEVKKASPS+G++R DFDPV IA +Y +GGA+CLS+LTD+ +F+G FE L  VR   V  PLLCK+FI+  +Q+Y AR  GA+A LLI A+L D D+ Y++ +   LGL  LVEVHD  E++RV                 TFE D+  T+ L + +    ++Q+ +++V ESGLF   D+  VQ  G +AVLVGE++++Q D   G+  L
Sbjct:   56 KSQIADLPIPRDFIAALRQASRA---PAVIAEVKKASPSQGVIRADFDPVLIANAYAEGGASCLSVLTDKSFFQGGFEVLVEVRQT-VGLPLLCKDFILTPYQLYQARAAGADAALLIVAILSDQDLTYLSKVANSLGLNVLVEVHDAEELERVLNLGGFPLIGINNRDLTTFETDLETTETLSQ-QFATRLQQQGVLLVSESGLFNRADLDRVQAVGAEAVLVGEALMRQSDVCAGLQQL 291          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROM1 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain NATL1A) GN=trpC PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.895e-50
Identity = 106/240 (44.17%), Postives = 156/240 (65.00%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            + + P  ++FI AL  +N +   PALI+E+KKASPSRGI+REDFD   I + Y++GGA C+S+LTD+K+F+G F+ L  VR   +  P+LCK+FI+  +Q+Y AR  GA+A LLIAA+L D D++Y++ + + LGLT LVEVHD  E++RV                 +F+ D+  TKKL +    + I++ +I +V ESGLF  +D+  V+  G  AVLVGES++ Q+D   G+  L G
Sbjct:   59 IKDLPKTKNFIDALRNSNSK---PALISEIKKASPSRGIIREDFDAKMIGKMYQEGGANCISVLTDKKFFQGGFDVLVEVRKE-IIIPILCKDFILYPYQLYQARAAGADAALLIAAILTDSDLKYLSKVAEHLGLTILVEVHDSEELERVLNINVFNLIGINNRNLKSFKTDLEVTKKLAKNYANQ-IKENSITLVSESGLFNREDLDLVKSYGADAVLVGESLMSQEDILGGVKKLVG 293          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROMA (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus GN=trpC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.112e-48
Identity = 100/217 (46.08%), Postives = 144/217 (66.36%), Query Frame = 2
Query:  107 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            PA+IAE+KKASPSRG++REDF P +IA +Y+KGGA CLS+LTD+ +F+G F+ L  VR   +  PLLCK+FI+  +QIY AR  GA+A+LLIAA+L D D+ Y+  I   LGL+ LVEVHD  E++RV                 TFE D++ T K+   E   +++++++++V ESG+FT +D+  V   G  AVL+GES+++Q D    +  L G
Sbjct:   79 PAVIAEIKKASPSRGLIREDFKPGDIAIAYQKGGATCLSVLTDKTFFQGGFDVLADVRKI-IDIPLLCKDFILHPYQIYQARASGADAILLIAAILSDQDLMYLNKIALSLGLSILVEVHDAAELNRVLRLGGFPLIGINNRDLKTFETDLTTTCKVAT-ECSNLLKEQDVLLVSESGIFTREDLQKVASFGASAVLIGESLMRQKDLTNALKELIG 293          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROMP (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.605e-47
Identity = 97/241 (40.25%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGT 760
            LD   P +DF  +++ +  +   P +IAE+KKASPS+G++REDF P EIA  YEK GA+C+S+LTD+++F+GS+E L+ VR+A    PLLCK+FI+ A+QIY AR  GA+A+LLIAA+L D D+ Y+  I   L ++ LVEVHD +E++R+                 TF+ D+  + +++  +  +I  + NI+ + ESG+   DD+  +   G+K VL+GE  +++ D       LF +
Sbjct:   59 LDKLSPPKDFFQSILHSKIK---PGVIAEIKKASPSKGVIREDFKPKEIASCYEKSGASCISVLTDKRFFQGSYEILQDVRTA-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLFYLKKIADNLKMSVLVEVHDGQELERILSLKSFNLIGINNRNLKTFKTDLKTSIRIM-SKYSDIFSKHNIVPISESGINNSDDLKTLNSIGIKGVLIGERFMRESDIENSFKKLFNS 294          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROM5 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=trpC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.605e-47
Identity = 99/239 (41.42%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            LD  PP +DF  +++ +  +   P +IAE+KKASPS+G++REDF P EIA SYE+ GA+C+S+LTD+++F+GS+E L+ VR A    PLLCK+FI+ A+QIY AR  GA+A+LLIAA+L D D+ Y+  I   LG++ LVEVHDE+E+ R+                 TF+ D+  + +++  +  +I  + NII + ESG+   +++  +   G+K VL+GE  +++ D       LF
Sbjct:   59 LDKLPPTKDFGKSILQSKIK---PGVIAEIKKASPSKGVIREDFRPNEIAFSYERSGASCISVLTDKRFFQGSYEILQDVRGA-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLFYLKKIADNLGMSVLVEVHDEQELKRILSFKLFDLIGINNRDLKTFKTDLKTSIEMM-SKYSDIFSKHNIIPISESGINNSEELKKLVSIGIKGVLIGERFMRECDIEHSFKKLF 292          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_AZOSB (Indole-3-glycerol phosphate synthase OS=Azoarcus sp. (strain BH72) GN=trpC PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.775e-46
Identity = 110/236 (46.61%), Postives = 147/236 (62.29%), Query Frame = 2
Query:   50 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            P ARDF+GA+       G PA+IAE+KKASPS+G++REDF P +IA SYE  GAACLS+LTD+ +F+G+ E L+A R+A    P L K+F+VDA+Q+Y AR  GA+A+LLIAA L   +++ M  I   LG+  LVEVHD  E+++                  TFEV +  T  LL     E  R    IVV ESG+  P D+A ++E GV A LVGE+ ++  DPG G+  LFG
Sbjct:   36 PAARDFVGAIRG-RITAGRPAVIAEIKKASPSKGVIREDFRPADIAPSYEAAGAACLSVLTDKPFFQGAPEYLQAARAA-CALPALRKDFLVDAYQVYEARAMGADAILLIAACLSLAEMQDMEAIAHGLGMGVLVEVHDGAELEQA-LKLRTPLVGINNRNLRTFEVSLQTTLGLLPRLAAEADR----IVVTESGILAPADVALMRENGVNAFLVGEAFMRVPDPGAGLRALFG 264          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROM9 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=trpC PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.962e-45
Identity = 94/241 (39.00%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGT 760
            ++N P  +DF   ++ +  +   P LIAE+KKASPS+G++R+DF+P +IA  YE+ GA+C+S+LTD+++F+GS+E LE VR +    PLLCK+FI+ A+QIY AR  GA+A+LLIAA+L D D+ Y+  I   L ++ LVEVH++ E++R+                 TF+ D+  + +L+     +I  ++NI+ + ESG+    D+  ++  G+K VL+GE+ +++ D  K    LF +
Sbjct:   59 IENLPDPKDFYKNILESKIK---PGLIAEIKKASPSKGVIRKDFNPEDIAICYEELGASCISVLTDKRFFQGSYEILETVRKS-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLIYLKKIADNLKMSVLVEVHNDNELERILKLKSFNLIGINNRDLKTFKTDLKTSIELMH-IYADIFLKQNILPISESGINCAQDLESLRSIGIKGVLIGETFMRESDIEKSFKKLFNS 294          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROMS (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain AS9601) GN=trpC PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.739e-45
Identity = 94/241 (39.00%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGT 760
            ++N P  +DF   ++ +  +   P +IAE+KKASPS+G++R+DF+P  IA  YE  GA+C+S+LTD+K+F+GS+E LE VR +    PLLCK+FI+ A+QIY AR  GA+A+LLIAA+L D D+ Y+  I   L ++ LVEVH+  E++R+                 TF+ D+  +K+L+     +I  ++NII + ESG+   +D+  ++  G+  VL+GE+ +++ D  +    LF +
Sbjct:   59 IENLPTPKDFYKNILESKIK---PGVIAEIKKASPSKGVIRKDFNPENIAICYEGLGASCISVLTDKKFFQGSYEILETVRKS-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLIYLKKIADNLKMSVLVEVHNSYELERILKLKSFNLIGINNRDLKTFKTDLKTSKELM-NTYADIFLKQNIIPISESGINCAEDLESLRSIGIMGVLIGETFMRETDIEQSFKKLFNS 294          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_POLNA (Indole-3-glycerol phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpC PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.272e-44
Identity = 100/233 (42.92%), Postives = 150/233 (64.38%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            RDF+GAL A     G PA+IAE+KKASPS+G+LR DF P +IA+SY + GAACLS+LTD+++F+GS + L+  R A    P+L K+FI+DA+Q+Y +R  GA+ +LLIAA L D  ++ +  +   L +  LVEVHDE E++R                  TFEV +  T +L+    G++  ++  ++V ESG+ TP+D+  +++A V A LVGE+ ++ D+PG  +  LFG
Sbjct:   39 RDFVGALRA-KIAAGKPAVIAEIKKASPSKGVLRADFIPADIAQSYAEFGAACLSVLTDQQFFQGSIDYLKQAR-ASCSLPVLRKDFIIDAYQVYESRVMGADCILLIAACLDDAQMKTLEALAMSLDMAVLVEVHDEAELERA-LKLRTPLIGINNRNLNTFEVSLDTTLRLM----GKVPAER--LLVTESGITTPEDVKRMRDARVNAFLVGEAFMRADEPGVALAELFG 262          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PROM2 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=trpC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.170e-44
Identity = 92/239 (38.49%), Postives = 152/239 (63.60%), Query Frame = 2
Query:   38 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            ++N P  +DF   ++ +  +   P +IAE+KKASPS+G++R+DF+P +IA  YE  GA+C+S+LTD+++F+GS+E LE VR +    PLLCK+FI+ A+QIY AR  GA+A+LLIAA+L D D+ Y+  I   L ++ LVEVH++ E++R+                 TF+ D+  + +L+     +I  ++NI+ + ESG+    D+  ++  G+K VL+GE+ +++ D  +    LF
Sbjct:   59 IENLPAPKDFYKNILESKIK---PGVIAEIKKASPSKGVIRKDFNPKDIAICYEGLGASCISVLTDKRFFQGSYEILETVRKS-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLIYLKKIADNLKMSVLVEVHNDNELERILKLKSFNLIGINNRDLKTFKTDLKTSIELM-NVYADIFSKQNILPISESGINCAKDLESLRSIGIKGVLIGETFMRESDIEESFNKLF 292          
The following BLAST results are available for this feature:
BLAST of DY305782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TRPC_PROMM5.895e-5044.81Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROM15.895e-5044.17Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROMA1.112e-4846.08Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROMP1.605e-4740.25Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROM51.605e-4741.42Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_AZOSB1.775e-4646.61Indole-3-glycerol phosphate synthase OS=Azoarcus s... [more]
TRPC_PROM91.962e-4539.00Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROMS9.739e-4539.00Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_POLNA1.272e-4442.92Indole-3-glycerol phosphate synthase OS=Polaromona... [more]
TRPC_PROM22.170e-4438.49Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305782 ID=DY305782; Name=DY305782; organism=Citrus sinensis; type=EST; length=1262bp
GAAAACAGAGGAGGCCATTATCTATGCTCAAAATGCCCTTGACAATGCTC
CTCCAGCTAGAGATTTCATTGGAGCTCTTATGGCTGCCAATCAACGAACT
GGACTTCCTGCTCTGATTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAGG
AATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAGA
AAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAAG
GGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCCC
CCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCCC
GAACTAAAGGTGCAAATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGAT
CTTGATATCAGATACATGACTAACATCTGCAAGATGCTTGGTTTGACTGC
ACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATTG
AGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGAG
GTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAAT
AATCCGTCAAAAGAACATAATTGTGGTTGGTGAATCTGGGCTATTTACTC
CCGATGATATCGCATACGTACAAGAAGCTGGTGTTAAAGCTGTTCTGGTT
GGGGAGTCAATAGTGAAGCAAGACGACCCCGGGAAGGGAATAACTGGACT
TTTTGGAACACACATTTCTGTATGAGCTCCTATTTTATTGTTTCTCAGAG
TGTTCGGGTGAATGTTATTCAGATGAAAGATGAGTAAAGTCACCTTTTGA
TCAATCATTAAATATACCGTCCCCCTTATTGTATTCTATAACCCTATTTC
CTTTTCCTTTTGAATTTGGTAACTTTCACTAATGAAATAGAAAAAAAGAA
TTGAACCTGAATAGAATGGGTAATTGTTTGAAGGGATTGAAAAAAAAAAA
AAAAAAAAATGGGGGTCCCCCCGCCTTTTTCCCGGCGAAAAAAAAAAACA
AAAAAAAAGAAACCCCGGAGGGGGGGGGCCGGGAAACCCCCTTTCCCCCC
CCAATATTTTGGTTTCGTAATTTAAAATTTTCCACGGGGGGCCCCCCCTT
TTTTTTAAAACCCCCCTCGGGGGAGGAGGGGAAAAAAAAACCCCTTGGGG
GTGTTTTCTCCCCAACATTTTTTTATACCCCCCCCCCTCTTTAGAACCCC
CCCCCCCCCCCC
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