DY305782

Overview
NameDY305782
Unique NameDY305782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_NEIMB (Indole-3-glycerol phosphate synthase OS=Neisseria meningitidis serogroup B GN=trpC PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.717e-42
Identity = 101/236 (42.80%), Postives = 138/236 (58.47%), Query Frame = 2
Query:   47 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            A P R FI ++   + R  LPA+IAE+KKASPS+G++R DF P EIAR+YE  GAACLS+LTDE YF+GS E L+  R A V  P+L K+FI+D +Q+Y AR  GA+AVLLIAA L    +     +   LG+T L+E+HDE E+++                  TFEV +  T  LL    G+        VV ESG+    D+ ++Q  GV   L+GE+ ++ DD    +  LF
Sbjct:   35 AAPVRSFIDSIRGKH-RLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQGSPEYLKQAREA-VSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVAHELGMTVLLELHDETELEK-CRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGK-------TVVTESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_NEIG2 (Indole-3-glycerol phosphate synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=trpC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.008e-41
Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 2
Query:   47 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            A P R FI ++   + R  LPA+IAE+KKASPS+G++R DF P EIAR+YE  GAACLS+LTDE YF+GS E L+  R A V  P+L K+FI+D +Q+Y AR  GA+AVLLIAA L    +     +   LG+T L+E+HDE E+++                  TFEV +  T  LL    G+        VV ESG+    D+ +++  GV   L+GE+ ++ DD G  +  LF
Sbjct:   35 AAPVRSFIDSIRGKH-RLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQGSPEYLKQAREA-VLLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQGQLERFEALAHELGMTVLLELHDETELEK-CRNLTTPLRGVNNRNLRTFEVSLDQTLSLLPALEGK-------TVVTESGITGKADVEFMRARGVHTFLIGETFMRADDIGAEVGKLF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_NEIG1 (Indole-3-glycerol phosphate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=trpC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.008e-41
Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 2
Query:   47 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            A P R FI ++   + R  LPA+IAE+KKASPS+G++R DF P EIAR+YE  GAACLS+LTDE YF+GS E L+  R A V  P+L K+FI+D +Q+Y AR  GA+AVLLIAA L    +     +   LG+T L+E+HDE E+++                  TFEV +  T  LL    G+        VV ESG+    D+ +++  GV   L+GE+ ++ DD G  +  LF
Sbjct:   35 AAPVRSFIDSIRGKH-RLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQGSPEYLKQAREA-VLLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQGQLERFEALAHELGMTVLLELHDETELEK-CRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGK-------TVVTESGITGKADVEFMRARGVHTFLIGETFMRADDIGAEVGKLF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURVG (Indole-3-glycerol phosphate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=trpC PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.316e-41
Identity = 105/237 (44.30%), Postives = 142/237 (59.92%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   RDF+GAL A  Q  G PA+IAEVKKASPS+G+LRE F P +IARSY   GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GA+A+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+      +   + +VV ESG+ +  D+  ++ A V A LVGE+ ++ D+PG  +  +F
Sbjct:   33 SARDLRDFVGALRA-KQAAGQPAVIAEVKKASPSKGVLREHFVPADIARSYATHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQILEARAMGADAILLIAAALDTPLMQELEAYAHSLGLAVLVEVHDRNEMEQA-LTLKTPLVGINNRNLRTFETTIQTTLDMLD------MVPADRMVVTESGILSRADVDTMRAANVNAFLVGEAFMRADEPGAALARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_LARHH (Indole-3-glycerol phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=trpC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.830e-41
Identity = 98/242 (40.50%), Postives = 139/242 (57.44%), Query Frame = 2
Query:   29 QNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +N  +     RDF GAL    Q  G   +IAE+KKASPS+GI+R DF P  IA SY   GAACLS+LTD +YF+G+ + L A R A    P+L K+F+VD +Q++ AR  GA+ +LLI A L +  +     I + LG+  LVE HD  E+DR                  TF+V +  T  LL      +I+ +  + + ESG+ TPDD+  ++EAGV + LVGE+ +++ DPG  +  LF
Sbjct:   29 RNDAETRRDIRDFAGALTRC-QSAGRAGVIAEIKKASPSKGIIRPDFQPAAIAESYAGHGAACLSVLTDVRYFQGAADYLVAARDA-CDLPVLRKDFLVDEYQVFEARAMGADCILLIVAALDNARLADFEAIARELGMAVLVETHDAAELDRA-LRLASPLIGVNNRNLRTFDVSLDTTLSLL-----PVIQAEGRMAITESGISTPDDVIRMREAGVNSFLVGEAFMREADPGAALAHLF 262          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_RHOFD (Indole-3-glycerol phosphate synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.455e-40
Identity = 100/234 (42.74%), Postives = 142/234 (60.68%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGT 760
            RDF+ AL       G PA+IAE+KK+SPS+G+LREDF P +IA+SY + GAACLS+LTD ++F+G  + L+  R A    P+L K+F++DA+QIY +R  GA+AVLLIAA+L D  ++ +  I + L +  LVEVHD  E+ R                  TFEV +  T  L+     E+   +  ++V ESG+ T DD+  +  AGV A LVGE+ ++  DPG  +  LF T
Sbjct:   39 RDFVAALRG-KIAAGQPAVIAEIKKSSPSKGVLREDFIPADIAQSYAEHGAACLSVLTDLQFFRGCIDYLKQAR-ASCPLPVLRKDFMLDAYQIYESRACGADAVLLIAAILDDAQMKDLEAIARSLDMAVLVEVHDAPELARA-LQLKTPLIGINNRNLKTFEVSLDTTLTLMR----ELPADR--LLVCESGIHTRDDVLRMGAAGVNAFLVGEAFMRAPDPGLALAELFAT 263          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURCM (Indole-3-glycerol phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trpC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.901e-40
Identity = 105/237 (44.30%), Postives = 140/237 (59.07%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   RDF+GAL A  Q  G  A+IAEVKKASPS+G+LRE F P +IARSY   GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GA+A+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+      +     IVV ESG+ +  D+  ++ A V A LVGE+ ++ D PG+ +  +F
Sbjct:   33 SARDLRDFVGALRA-KQAAGHAAVIAEVKKASPSKGVLREHFVPADIARSYAAHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQILEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRDEMEQA-LTLKTPLLGINNRNLRTFETSIQTTLDMLD------MIPPERIVVTESGILSRTDVDTMRAANVNAFLVGEAFMRADQPGEELARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_RHOPS (Indole-3-glycerol phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=trpC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.482e-40
Identity = 98/242 (40.50%), Postives = 142/242 (58.68%), Query Frame = 2
Query:    2 KTEEAIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            K E  +   Q A   APP R F+ AL A     G  ALIAE+KKASPS+G++R DFDP  +A++Y++GGAACLS+LTD   F+G  + L A R+A V  P L K+F+ D +Q+  AR  GA+ +L+I A L D + R + +    LG+  L+EVH+  E+DR                  TFEV ++ ++ L        +   + ++VGESG+FTPDD+A +   G+   LVGES+++Q D
Sbjct:   20 KRERPLAALQAAARAAPPPRGFVSALRA-KLADGDYALIAEIKKASPSKGLIRPDFDPPALAKAYQQGGAACLSVLTDTPSFQGHLDYLVAARAA-VSLPALRKDFMYDTYQVVEARAHGADCILIIMAALDDSEARDIEDAALDLGMDVLLEVHNHAELDRA-LALRSPMIGVNNRNLRTFEVTLATSEALAP------LIPSDRLMVGESGIFTPDDLARLARVGMSTFLVGESLMRQQD 252          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURA4 (Indole-3-glycerol phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=trpC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.234e-40
Identity = 104/237 (43.88%), Postives = 140/237 (59.07%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   RDF+GAL A  Q  G  A+IAEVKKASPS+G+LRE F P +IARSY   GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GA+A+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+      +     +VV ESG+ +  D+  ++ A V A LVGE+ ++ D PG+ +  +F
Sbjct:   33 SARDLRDFVGALRA-KQAAGHAAVIAEVKKASPSKGVLREHFVPADIARSYAAHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQILEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRDEMEQA-LTLKTPLLGINNRNLRTFETSIQTTLDMLD------MIPPERMVVTESGILSRTDVDTMRAANVNAFLVGEAFMRADQPGEELARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_ACIAD (Indole-3-glycerol phosphate synthase OS=Acinetobacter sp. (strain ADP1) GN=trpC PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 5.530e-40
Identity = 96/240 (40.00%), Postives = 138/240 (57.50%), Query Frame = 2
Query:   47 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            APP R F  +L     R+  P +IAE+KKASPS+G++R DF+P EIA+ YE+ GAACLS+LTD  +F+G+ EN+ A+       P L K+F++D + +  AR   A+ +LLI A L D  +  M+       L  LVEVHDE+E++R                  TF+VD++ +   KKLL+  R         ++V ESG+ TP D+  +QE  + + LVGES +KQ  P +  T LFG
Sbjct:   39 APPVRGFAQSL-----RSKRPGVIAEIKKASPSKGVIRADFNPAEIAQQYEQAGAACLSVLTDVDFFQGADENI-AIARQHCSLPALRKDFLIDPYNVVEARALQADCILLIVACLSDQQLEEMSKTAFEYDLDVLVEVHDEQELERALKLSEQCLLGVNNRNLKTFDVDLNTSLRLKKLLDPSR---------LLVTESGIATPQDVQLMQEHDIHSFLVGESFMKQPRPDQAFTELFG 263          
The following BLAST results are available for this feature:
BLAST of DY305782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TRPC_NEIMB7.717e-4242.80Indole-3-glycerol phosphate synthase OS=Neisseria ... [more]
TRPC_NEIG21.008e-4142.80Indole-3-glycerol phosphate synthase OS=Neisseria ... [more]
TRPC_NEIG11.008e-4142.80Indole-3-glycerol phosphate synthase OS=Neisseria ... [more]
TRPC_BURVG1.316e-4144.30Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_LARHH3.830e-4140.50Indole-3-glycerol phosphate synthase OS=Laribacter... [more]
TRPC_RHOFD1.455e-4042.74Indole-3-glycerol phosphate synthase OS=Rhodoferax... [more]
TRPC_BURCM1.901e-4044.30Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_RHOPS2.482e-4040.50Indole-3-glycerol phosphate synthase OS=Rhodopseud... [more]
TRPC_BURA44.234e-4043.88Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_ACIAD5.530e-4040.00Indole-3-glycerol phosphate synthase OS=Acinetobac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305782 ID=DY305782; Name=DY305782; organism=Citrus sinensis; type=EST; length=1262bp
GAAAACAGAGGAGGCCATTATCTATGCTCAAAATGCCCTTGACAATGCTC
CTCCAGCTAGAGATTTCATTGGAGCTCTTATGGCTGCCAATCAACGAACT
GGACTTCCTGCTCTGATTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAGG
AATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAGA
AAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAAG
GGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCCC
CCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCCC
GAACTAAAGGTGCAAATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGAT
CTTGATATCAGATACATGACTAACATCTGCAAGATGCTTGGTTTGACTGC
ACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATTG
AGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGAG
GTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAAT
AATCCGTCAAAAGAACATAATTGTGGTTGGTGAATCTGGGCTATTTACTC
CCGATGATATCGCATACGTACAAGAAGCTGGTGTTAAAGCTGTTCTGGTT
GGGGAGTCAATAGTGAAGCAAGACGACCCCGGGAAGGGAATAACTGGACT
TTTTGGAACACACATTTCTGTATGAGCTCCTATTTTATTGTTTCTCAGAG
TGTTCGGGTGAATGTTATTCAGATGAAAGATGAGTAAAGTCACCTTTTGA
TCAATCATTAAATATACCGTCCCCCTTATTGTATTCTATAACCCTATTTC
CTTTTCCTTTTGAATTTGGTAACTTTCACTAATGAAATAGAAAAAAAGAA
TTGAACCTGAATAGAATGGGTAATTGTTTGAAGGGATTGAAAAAAAAAAA
AAAAAAAAATGGGGGTCCCCCCGCCTTTTTCCCGGCGAAAAAAAAAAACA
AAAAAAAAGAAACCCCGGAGGGGGGGGGCCGGGAAACCCCCTTTCCCCCC
CCAATATTTTGGTTTCGTAATTTAAAATTTTCCACGGGGGGCCCCCCCTT
TTTTTTAAAACCCCCCTCGGGGGAGGAGGGGAAAAAAAAACCCCTTGGGG
GTGTTTTCTCCCCAACATTTTTTTATACCCCCCCCCCTCTTTAGAACCCC
CCCCCCCCCCCC
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