DY305782

Overview
NameDY305782
Unique NameDY305782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_ACIF5 (Indole-3-glycerol phosphate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.232e-39
Identity = 103/251 (41.04%), Postives = 146/251 (58.17%), Query Frame = 2
Query:    2 KTEEAIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +T   +   Q A+    P R+F+GA+ A     G PA+IAE+KKASPS G++REDF+PV IA+ Y   GAACLS+LTDE YF+G+   L A R A    P+L K+F +D +Q++ AR  GA+A+LLI A L D +++ +    + L L  LVEVHD  E+ R                   F  +I  T KLL     EI R++  IVV ESG+ + +++A ++ AGV A LVGE+ ++   PG  +  LF
Sbjct:   20 QTRLGLAELQAAVALTAPPRNFVGAVRA-RMAQGQPAVIAEIKKASPSAGVIREDFNPVTIAQDYAAHGAACLSVLTDEHYFQGADLYLAAAREA-CPLPVLRKDFCIDPYQVWEARAIGADAILLIVAALSDAELQSLEATAQSLDLAVLVEVHDAAELQRA-LKLRTPLIGINNRDLRRFVTEIETTLKLLP----EIPRER--IVVTESGIRSREEVATLRAAGVGAFLVGEAFMRTAQPGDALQHLF 261          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_ACIF2 (Indole-3-glycerol phosphate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.232e-39
Identity = 103/251 (41.04%), Postives = 146/251 (58.17%), Query Frame = 2
Query:    2 KTEEAIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +T   +   Q A+    P R+F+GA+ A     G PA+IAE+KKASPS G++REDF+PV IA+ Y   GAACLS+LTDE YF+G+   L A R A    P+L K+F +D +Q++ AR  GA+A+LLI A L D +++ +    + L L  LVEVHD  E+ R                   F  +I  T KLL     EI R++  IVV ESG+ + +++A ++ AGV A LVGE+ ++   PG  +  LF
Sbjct:   20 QTRLGLAELQAAVALTAPPRNFVGAVRA-RMAQGQPAVIAEIKKASPSAGVIREDFNPVTIAQDYAAHGAACLSVLTDEHYFQGADLYLAAAREA-CPLPVLRKDFCIDPYQVWEARAIGADAILLIVAALSDAELQSLEATAQSLDLAVLVEVHDAAELQRA-LKLRTPLIGINNRDLRRFVTEIETTLKLLP----EIPRER--IVVTESGIRSREEVATLRAAGVGAFLVGEAFMRTAQPGDALQHLF 261          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_XYLFA (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa GN=trpC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.102e-39
Identity = 97/235 (41.28%), Postives = 137/235 (58.30%), Query Frame = 2
Query:   50 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            P  R F GAL A     G PA+IAE+KKASPS+G+LREDF P EIA SYE GGA+CLS+LTD  +FKG  + L   R A    P+L K+F +D +Q+Y AR  GA+ +LLI A L D  +  ++ +   LG+  LVEVHD  E++R                  TF V +  T  +    +G + R +  ++V ESG+ T  D+  ++ AGV A LVGE+ ++  +PG+ +  +F
Sbjct:   36 PTPRGFAGALQATIAH-GDPAVIAEIKKASPSKGVLREDFRPAEIAISYELGGASCLSVLTDVHFFKGHDDYLSQARDA-CTLPVLRKDFTIDPYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERA-IQISAPLIGINNRNLSTFNVSLETTLTM----KGLVPRDR--LLVSESGILTSADVQRLRAAGVNAFLVGEAFMRATEPGESLREMF 261          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_RHOBA (Indole-3-glycerol phosphate synthase OS=Rhodopirellula baltica GN=trpC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.102e-39
Identity = 101/231 (43.72%), Postives = 139/231 (60.17%), Query Frame = 2
Query:   35 ALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            A  + P  RDF G+L A +Q      LIAEVK+ASPS G++REDFDP  IA+SYE GGAAC+S+LTDE +F+GS + L  VRSA V  P+L K+FIVD +Q+  AR  GA+AVLLIA  L    +  M      LGL  L+E+++   +  V                 TFE D+ +  +L      +I   +  +VVGESG+ T  D+A ++  G+KA+LVGES+++Q D
Sbjct:   30 AAKDLPVCRDFHGSLAATDQ----VRLIAEVKRASPSAGLIREDFDPPTIAKSYEDGGAACISVLTDEPFFQGSLDYLRQVRSA-VDLPILRKDFIVDPYQLLQARVAGADAVLLIAECLSPQQLIEMDEQASELGLQTLIELYEPENLAPV-LATKTRLVGINNRDLRTFETDLQHCVRL----AADIPSDR--LVVGESGIRTAADVAMLKAGGIKAILVGESLMRQPD 248          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_XANP2 (Indole-3-glycerol phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.585e-39
Identity = 92/227 (40.53%), Postives = 139/227 (61.23%), Query Frame = 2
Query:   47 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            AP  R F GA+ A +   G  ALIAE+KKASPS+G++R DFDP  +AR+Y++GGA CLS+LTD   F+G+ E L + R+A V  P+L K+F+ D +Q+  AR  GA+ +L+I A + DL  R + +     G+ A+VEVHD+ E++R                  TFE  +  +++L           K+ I +GESG+FTP D+A + + G+  +LVGES+++Q+D
Sbjct:   35 APRVRPFAGAI-ATSLAEGRTALIAEIKKASPSKGLIRADFDPPALARAYQRGGATCLSVLTDTPSFQGAPEFLGSARAA-VDLPVLRKDFMYDTYQVAEARAWGADCILIIMAGVDDLLARDLADAAAAYGMDAIVEVHDDAELERA-LDLPCRLIGINNRNLRTFETSLETSERLAPRV------PKDRIAIGESGIFTPQDVARLAKVGIGTILVGESLMRQED 252          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_VEREI (Indole-3-glycerol phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.585e-39
Identity = 97/236 (41.10%), Postives = 140/236 (59.32%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKG----GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            RDF GAL A   + G  A+IAE+KKASPS+G+LR DF   +IA+SY +G     AACLS+LTD+ +F+GS + L+  R A  + P+L K+F++D +Q+Y AR  GA+A+LLIAA L D  +     I + L +  L+EVHD  E++R                  +FEV +S T  +L     E       + V ESG+ TP D+  +++AGV+A LVGE+ ++  DPG  +  LF
Sbjct:   39 RDFEGALRAKISQ-GQAAVIAEIKKASPSKGLLRADFIAADIAQSYAEGDAGVSAACLSVLTDQAFFQGSIDYLKQAR-ASCQLPVLRKDFLLDPYQVYEARAMGADAILLIAACLDDAQLADFEAIARSLDMAVLLEVHDRPELERALARCKTPLVGINNRNLRSFEVSLSTTLDMLADMPPE------RLPVTESGILTPQDVKTLRDAGVQAFLVGEAFMRAADPGLALARLF 266          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_ACIAC (Indole-3-glycerol phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.682e-39
Identity = 99/236 (41.95%), Postives = 139/236 (58.90%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGG----AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            RDF GAL A     G  A+IAE+KKASPS+G++RE+F P +IA+SY +G     AACLS+LTD ++F+G  + L+  R A    P+L K+F+VDA+QIY +R  GA+A+LLIAA L D  +     I   LG+ ALVEVHD  E+DR                  TFEV +  T  L +          + ++V ESG+ TP D+  +++A V A LVGE+ ++  +PG  +  LF
Sbjct:   39 RDFEGALRA-KIAAGQAAVIAEIKKASPSKGVIRENFIPADIAQSYAEGNGKVSAACLSVLTDRQFFQGQPDYLKQAR-ASCALPVLRKDFMVDAYQIYESRAMGADAILLIAACLEDAQMAEFEAIAHSLGMAALVEVHDGAELDRA-LKLRTPLVGINNRNLRTFEVSLDTTVSLRKAV------PSDRLLVAESGILTPQDVKTLRDADVHAFLVGEAFMRAQEPGAALAKLF 265          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_VARPS (Indole-3-glycerol phosphate synthase OS=Variovorax paradoxus (strain S110) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.115e-39
Identity = 102/236 (43.22%), Postives = 140/236 (59.32%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKG----GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            RDF GAL       G  A+IAEVKKASPS+G+LREDF P +IA+SY +G     AACLS+LTD+++F+G  + L+  R A    P+L K+FIVDA+Q+Y +R  GA+AVLLIAA L D  ++    I + LG+  LVEVHD  E++R                   FEV I  T  LL           + + V ESG+ T +D+A ++ AGV A LVGE+ ++  +PG+ +  LF
Sbjct:   39 RDFEGALRT-RIAAGHAAVIAEVKKASPSKGVLREDFIPADIAQSYAEGDGEISAACLSVLTDKQFFQGGVDYLKQAR-ASCDLPVLRKDFIVDAYQVYESRAMGADAVLLIAACLDDAQMKDYEAIARGLGMAVLVEVHDAAELERA-LKLKTPLIGVNNRNLRNFEVSIQATIDLLPR------LPADRLAVTESGIATREDVATLRAAGVHAFLVGEAFMRAKEPGEALAALF 265          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PSEAE (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa GN=trpC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.043e-38
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   R F  AL+   +R   PA+IAE+KKASPS+G+LRE F P EIARSYE GGAACLS+LTD  +F+G+   L+  R+A    P++ K+F++D +QI  AR  GA+ +LLI + L D+ +  +    K +GL  LVEVHD  E++R                  TFEV +  T  LL     EI R +  +VV ESG+    D+  ++ + V A LVGE+ ++ DDPG  +  LF
Sbjct:   36 SADAPRGFANALLERAKRKE-PAVIAEIKKASPSKGVLREHFVPAEIARSYEAGGAACLSVLTDVDFFQGADAYLKEARAA-CALPVIRKDFMIDPYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLP----EIPRDR--LVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLF 264          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PSEA8 (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=trpC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.043e-38
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   R F  AL+   +R   PA+IAE+KKASPS+G+LRE F P EIARSYE GGAACLS+LTD  +F+G+   L+  R+A    P++ K+F++D +QI  AR  GA+ +LLI + L D+ +  +    K +GL  LVEVHD  E++R                  TFEV +  T  LL     EI R +  +VV ESG+    D+  ++ + V A LVGE+ ++ DDPG  +  LF
Sbjct:   36 SADAPRGFANALLERAKRKE-PAVIAEIKKASPSKGVLREHFVPAEIARSYEAGGAACLSVLTDVDFFQGADAYLKEARAA-CALPVIRKDFMIDPYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLP----EIPRDR--LVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLF 264          
The following BLAST results are available for this feature:
BLAST of DY305782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TRPC_ACIF51.232e-3941.04Indole-3-glycerol phosphate synthase OS=Acidithiob... [more]
TRPC_ACIF21.232e-3941.04Indole-3-glycerol phosphate synthase OS=Acidithiob... [more]
TRPC_XYLFA2.102e-3941.28Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_RHOBA2.102e-3943.72Indole-3-glycerol phosphate synthase OS=Rhodopirel... [more]
TRPC_XANP23.585e-3940.53Indole-3-glycerol phosphate synthase OS=Xanthobact... [more]
TRPC_VEREI3.585e-3941.10Indole-3-glycerol phosphate synthase OS=Verminephr... [more]
TRPC_ACIAC4.682e-3941.95Indole-3-glycerol phosphate synthase OS=Acidovorax... [more]
TRPC_VARPS6.115e-3943.22Indole-3-glycerol phosphate synthase OS=Variovorax... [more]
TRPC_PSEAE1.043e-3841.77Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEA81.043e-3841.77Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305782 ID=DY305782; Name=DY305782; organism=Citrus sinensis; type=EST; length=1262bp
GAAAACAGAGGAGGCCATTATCTATGCTCAAAATGCCCTTGACAATGCTC
CTCCAGCTAGAGATTTCATTGGAGCTCTTATGGCTGCCAATCAACGAACT
GGACTTCCTGCTCTGATTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAGG
AATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAGA
AAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAAG
GGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCCC
CCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCCC
GAACTAAAGGTGCAAATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGAT
CTTGATATCAGATACATGACTAACATCTGCAAGATGCTTGGTTTGACTGC
ACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATTG
AGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGAG
GTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAAT
AATCCGTCAAAAGAACATAATTGTGGTTGGTGAATCTGGGCTATTTACTC
CCGATGATATCGCATACGTACAAGAAGCTGGTGTTAAAGCTGTTCTGGTT
GGGGAGTCAATAGTGAAGCAAGACGACCCCGGGAAGGGAATAACTGGACT
TTTTGGAACACACATTTCTGTATGAGCTCCTATTTTATTGTTTCTCAGAG
TGTTCGGGTGAATGTTATTCAGATGAAAGATGAGTAAAGTCACCTTTTGA
TCAATCATTAAATATACCGTCCCCCTTATTGTATTCTATAACCCTATTTC
CTTTTCCTTTTGAATTTGGTAACTTTCACTAATGAAATAGAAAAAAAGAA
TTGAACCTGAATAGAATGGGTAATTGTTTGAAGGGATTGAAAAAAAAAAA
AAAAAAAAATGGGGGTCCCCCCGCCTTTTTCCCGGCGAAAAAAAAAAACA
AAAAAAAAGAAACCCCGGAGGGGGGGGGCCGGGAAACCCCCTTTCCCCCC
CCAATATTTTGGTTTCGTAATTTAAAATTTTCCACGGGGGGCCCCCCCTT
TTTTTTAAAACCCCCCTCGGGGGAGGAGGGGAAAAAAAAACCCCTTGGGG
GTGTTTTCTCCCCAACATTTTTTTATACCCCCCCCCCTCTTTAGAACCCC
CCCCCCCCCCCC
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