DY305782

Overview
NameDY305782
Unique NameDY305782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_RHOPT (Indole-3-glycerol phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.362e-38
Identity = 96/242 (39.67%), Postives = 140/242 (57.85%), Query Frame = 2
Query:    2 KTEEAIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 727
            K E  +   +     A P R F+ AL A +   G   LIAE+KKASPS+G++R DFDP  +AR+YE GGAACLS+LTD   F+GS + L A R+A V  P L K+F+ D +Q+  AR  GA+ +L+I A L D + + + +    LG+  L+EVHD  E++R                  TFEV ++ ++ L        +  K+ ++VGESG+FTP D+A +   G+   LVGES+++Q D
Sbjct:   20 KRERPLAAIEAIAREASPPRGFVKALRAKHA-AGDYGLIAEIKKASPSKGLIRADFDPSALARAYEAGGAACLSVLTDTPSFQGSLDYLVAARAA-VSLPALRKDFMYDTYQVVEARAHGADCILIIMAALDDAEAKDIEDAAFDLGMDVLLEVHDAPELERA-LKLRSPMVGVNNRNLRTFEVTLATSEALAP------LIPKDRLMVGESGIFTPADLARLARVGMSTFLVGESLMRQQD 252          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_PSEAB (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.362e-38
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A   R F  AL+   +R   PA+IAE+KKASPS+G+LRE F P EIARSYE GGAACLS+LTD  +F+G+   L+  R+A    P++ K+F++D +QI  AR  GA+ +LLI + L D+ +  +    K +GL  LVEVHD  E++R                  TFEV +  T  LL     EI R +  +VV ESG+    D+  ++ + V A LVGE+ ++ DDPG  +  LF
Sbjct:   36 SADAPRGFANALLERAKRKE-PAVIAEIKKASPSKGVLREHFVPAEIARSYEAGGAACLSVLTDVDFFQGADAYLKEARAA-CALPVVRKDFMIDPYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLP----EIPRDR--LVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLF 264          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURPP (Indole-3-glycerol phosphate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=trpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.779e-38
Identity = 101/232 (43.53%), Postives = 136/232 (58.62%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            RDF+GAL A +   GL A+I+EVKKASPS+G+LRE F P EIARSYEK GAACLS+LTD ++F+GS   LE  R+A    P+L K+FIVD +QI  AR  GA+A+LLIAA L    ++ +  +   LGL  LVEVHD  E+                    TFE  I  T  +LE          + IVV ESG+ +  D+  ++   V   LVGE+ ++ ++PG  +  +F
Sbjct:   38 RDFVGALRAKHT-AGLAAVISEVKKASPSKGVLREHFVPAEIARSYEKHGAACLSVLTDVQFFQGSVAYLEEARAA-CNLPVLRKDFIVDPYQIVEARAMGADAILLIAAALETSQMQDLEALAHSLGLAVLVEVHDHDEL-MESLTLKTPLIGINNRNLRTFETSIETTIGMLEA------IPDDRIVVTESGILSRADVERLRAMDVHTFLVGEAFMRANEPGVELARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_DECAR (Indole-3-glycerol phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=trpC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.324e-38
Identity = 103/249 (41.37%), Postives = 145/249 (58.23%), Query Frame = 2
Query:   14 AIIYAQNALDNAPPARDFIGALM--AANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            AI+ A+     AP  RDF+GA+    AN R   PA+IAE+KKASPS+GI+R DF P +IARSYE+ GAACLS+LTD +YF+G  E L++ R+A    P+L K+F+VDA+Q+  AR  GA+A+LLIAA L   +++ +       G+  LVEVH+  E+D                   TF V +  T  LL             IVV ESG+  P+++A ++   V A LVGE+ ++  +PG  +  LF
Sbjct:   26 AIVEAEAIAQPAP--RDFVGAIRNKIANDR---PAVIAEIKKASPSKGIIRPDFQPADIARSYEQHGAACLSVLTDRQYFQGCPEYLQSARAA-CALPVLRKDFMVDAYQVAEARAMGADAILLIAAALTLEEMQALETQASAYGMAVLVEVHNGEELD-AALQLKTPLLGINNRNLRTFAVTLETTLGLLSR------IPAGRIVVTESGILKPEEVALMRTNKVNAFLVGEAFMRVPEPGAELARLF 261          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_XYLFM (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain M12) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.035e-38
Identity = 96/235 (40.85%), Postives = 135/235 (57.45%), Query Frame = 2
Query:   50 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            P  R F  AL A     G PA+IAE+KKASPS+G+LREDF P EIA SYE GGA+CLS+LTD  +FKG    L   R A    P+L K+F +D +Q+Y AR  GA+ +LLI A L D  +  ++ +   LG+  LVEVHD  E++R                  TF V +  T  +    +G + R +  ++V ESG+ T  D+  ++ AGV A LVGE+ ++  +PG+ +  +F
Sbjct:   36 PTPRGFAAALQATIVH-GDPAVIAEIKKASPSKGVLREDFRPAEIAISYELGGASCLSVLTDVHFFKGHDNYLSQARDA-CTLPVLRKDFTIDPYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERA-IQISAPLIGINNRNLSTFNVSLETTLTM----KGLVPRDR--LLVSESGILTSADVQRLRAAGVNAFLVGEAFMRAAEPGESLREMF 261          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_RALPJ (Indole-3-glycerol phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.035e-38
Identity = 101/241 (41.91%), Postives = 137/241 (56.85%), Query Frame = 2
Query:   32 NALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            N  D+   AR F  A M      G  A+IAEVKKASPS+G+LR +F P +IARSY + GAACLS+LTDE++F+G  + L   R+A    P+L K+F+VD +Q+Y AR+ GA+ +LLI A L    +  +      LG+  LVEVHD  E+DR                  TFE  +  T  LL+          + IVV ESG+ TPDD+  ++ A V A LVGE+ ++ DDPG  +  LF
Sbjct:   35 NRSDSTLRARGFARA-MRDKIAAGNAAVIAEVKKASPSKGVLRPNFKPADIARSYAEHGAACLSVLTDEQFFQGHADYLREARAA-CTLPVLRKDFMVDLYQVYEARSWGADCILLIVAALDQGLMEELEACALELGMDVLVEVHDGHELDRA-LRLQTPLVGVNNRNLRTFETTLDTTLGLLKH------MPDDRIVVTESGILTPDDVRKMRAAAVNAFLVGEAFMRADDPGAELARLF 266          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_DELAS (Indole-3-glycerol phosphate synthase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.176e-38
Identity = 98/241 (40.66%), Postives = 141/241 (58.51%), Query Frame = 2
Query:   59 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKG-----GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNI----IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            RDF+GAL A     G   +IAE+KKASPS+G++REDF P +IA+SY  G      AACLS+LTD+++F+GS + L+  R A    P+L K+F+VD +QIY +R  GA+ VLLIAA L D  +  M  I   L +  LVEVHD  E+DR                  +FEV I  T  L          QKN+    ++V ESG+ + +D+  +++AG+ + LVGE+ ++  +PG+ +  LF
Sbjct:   39 RDFVGALRA-KIAAGQAGVIAEIKKASPSKGVIREDFIPADIAQSYADGDGKGVSAACLSVLTDKQFFQGSVDYLKQAR-ASCHLPVLRKDFMVDPYQIYESRAMGADCVLLIAACLDDAQMAEMEQIAHSLDMAVLVEVHDGAELDRA-LRLKTPLVGINNRNLRSFEVSIQTTLDL----------QKNVPADRLLVTESGIGSREDVKAMRDAGIHSFLVGEAFMRAKEPGEALAKLF 266          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_BURP6 (Indole-3-glycerol phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.176e-38
Identity = 100/237 (42.19%), Postives = 139/237 (58.65%), Query Frame = 2
Query:   44 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 754
            +A  +RDF+GAL   +   G  A+IAEVKKASPS+G+LRE F P +IARSY + GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+Q+  AR  GA+A+LLIAA L    +  +      LGL  LVEVH+  E+D                   TFE  I  T  +L+          + IVV ESG+ +  D+  ++ AGV   LVGE+ ++ ++PG  +  +F
Sbjct:   33 SARDSRDFVGALRDKHA-AGHAAVIAEVKKASPSKGVLREHFVPADIARSYAQHGAACLSVLTDERFFQGSARYLEQARAA-CALPVLRKDFIVDAYQVLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRSELDEA-LKLKTPLVGINNRNLRTFETTIDTTLGMLDA------IPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMF 260          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_CLOTH (Indole-3-glycerol phosphate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=trpC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.760e-38
Identity = 89/219 (40.64%), Postives = 135/219 (61.64%), Query Frame = 2
Query:   62 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 718
            DF GAL    +  G  ++IAEVKKASPS+GI++EDFDP++IA+ Y +     +S+LT+  +FKG  + L  +R      P+L K+FI+D WQIY +R  GA+A+LLI ++L D +++    +  +LG+  LVEVHDERE++R                  TFEVD+ NT+KL+           + +VV ESG+   +D+ Y++E GV AVL+GE+ ++
Sbjct:   40 DFYGAL----KNNGDISIIAEVKKASPSKGIIKEDFDPLKIAKEYVESDIQAISVLTERNFFKGDEDYLVKIRQF-CPLPILRKDFIIDLWQIYESRYIGADAILLIVSLLSDEELKKFQIVANILGMQCLVEVHDERELERA-LESGARIIGINNRDLRTFEVDLKNTEKLMNR------IPNDRVVVSESGIKDTEDLKYLKELGVDAVLIGETFMR 246          
BLAST of DY305782 vs. ExPASy Swiss-Prot
Match: TRPC_CAUSK (Indole-3-glycerol phosphate synthase OS=Caulobacter sp. (strain K31) GN=trpC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.760e-38
Identity = 100/252 (39.68%), Postives = 144/252 (57.14%), Query Frame = 2
Query:    2 KTEEAIIYAQNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGANAVLLIAAVLPDLDIRYMTNICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 757
            K   +I   + A   A   R F  AL  A+   G  ALIAE+KKASPS+G++R DFDP  +AR+Y  GGA+CLS+LTD   F+G+   L  VR+A V  P + K+F+VD WQ+  +R  GA+A+L+I A++ D     + +    LG+ ALVEVHDE EM+R                  +F VD++ T++L       +    + ++V ESGLF   D+A ++ AG KA+LVGES+++Q D       L G
Sbjct:   20 KRRRSIAQLEAAAKAANSPRGFKAAL-EADHAPGKLALIAEIKKASPSKGLIRADFDPPALARAYAAGGASCLSVLTDGPSFQGADGYLIDVRAA-VSLPCIRKDFLVDPWQVAESRALGADAILVILAMIDDAVAADLMSEAARLGMDALVEVHDEAEMERA-GKLGSTLVGINNRDLKSFVVDLAVTERL------AVQAPSDALLVTESGLFVAADVARMEAAGAKAMLVGESLMRQADVAAATRALLG 262          
The following BLAST results are available for this feature:
BLAST of DY305782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TRPC_RHOPT1.362e-3839.67Indole-3-glycerol phosphate synthase OS=Rhodopseud... [more]
TRPC_PSEAB1.362e-3841.77Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_BURPP1.779e-3843.53Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_DECAR2.324e-3841.37Indole-3-glycerol phosphate synthase OS=Dechloromo... [more]
TRPC_XYLFM3.035e-3840.85Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_RALPJ3.035e-3841.91Indole-3-glycerol phosphate synthase OS=Ralstonia ... [more]
TRPC_DELAS5.176e-3840.66Indole-3-glycerol phosphate synthase OS=Delftia ac... [more]
TRPC_BURP65.176e-3842.19Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_CLOTH6.760e-3840.64Indole-3-glycerol phosphate synthase OS=Clostridiu... [more]
TRPC_CAUSK6.760e-3839.68Indole-3-glycerol phosphate synthase OS=Caulobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305782 ID=DY305782; Name=DY305782; organism=Citrus sinensis; type=EST; length=1262bp
GAAAACAGAGGAGGCCATTATCTATGCTCAAAATGCCCTTGACAATGCTC
CTCCAGCTAGAGATTTCATTGGAGCTCTTATGGCTGCCAATCAACGAACT
GGACTTCCTGCTCTGATTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAGG
AATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAGA
AAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAAG
GGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCCC
CCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCCC
GAACTAAAGGTGCAAATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGAT
CTTGATATCAGATACATGACTAACATCTGCAAGATGCTTGGTTTGACTGC
ACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATTG
AGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGAG
GTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAAT
AATCCGTCAAAAGAACATAATTGTGGTTGGTGAATCTGGGCTATTTACTC
CCGATGATATCGCATACGTACAAGAAGCTGGTGTTAAAGCTGTTCTGGTT
GGGGAGTCAATAGTGAAGCAAGACGACCCCGGGAAGGGAATAACTGGACT
TTTTGGAACACACATTTCTGTATGAGCTCCTATTTTATTGTTTCTCAGAG
TGTTCGGGTGAATGTTATTCAGATGAAAGATGAGTAAAGTCACCTTTTGA
TCAATCATTAAATATACCGTCCCCCTTATTGTATTCTATAACCCTATTTC
CTTTTCCTTTTGAATTTGGTAACTTTCACTAATGAAATAGAAAAAAAGAA
TTGAACCTGAATAGAATGGGTAATTGTTTGAAGGGATTGAAAAAAAAAAA
AAAAAAAAATGGGGGTCCCCCCGCCTTTTTCCCGGCGAAAAAAAAAAACA
AAAAAAAAGAAACCCCGGAGGGGGGGGGCCGGGAAACCCCCTTTCCCCCC
CCAATATTTTGGTTTCGTAATTTAAAATTTTCCACGGGGGGCCCCCCCTT
TTTTTTAAAACCCCCCTCGGGGGAGGAGGGGAAAAAAAAACCCCTTGGGG
GTGTTTTCTCCCCAACATTTTTTTATACCCCCCCCCCTCTTTAGAACCCC
CCCCCCCCCCCC
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