DY305777

Overview
NameDY305777
Unique NameDY305777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.359e-23
Identity = 71/210 (33.81%), Postives = 112/210 (53.33%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYICNAGEELV 616
            V A  V  FK LLP  W+E+ +F  + +LVG+PV+ V + ++            R+L+     DNLL++       +AD+++T  E  Y +   S+L+ V  P + ++   + EII    KE+  LFP     +     ++   VVK  +S+++  PG +P R  Q++PV+  +LAG YTKQ Y+ SMEGA LSG+  +  I    E LV
Sbjct:  376 VFATPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINVHIWFD------------RKLKNTS--DNLLFSRSPLLSVYADMSVTCKE--YYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLV 569          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.770e-22
Identity = 71/215 (33.02%), Postives = 114/215 (53.02%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYICNAGEELVALRKQ 631
            V A  V   K LLP  W+ + +F  + +LVG+PV+ V + ++            R+L+     D+LL++       +AD+++T  E YY   Q S+L+ V  P + ++   +D+II+    E+  LFP     +     ++   VVK  +S+++  P  +P RP Q++P++  +LAG YTKQ Y+ SMEGA LSG K  A       EL+A R Q
Sbjct:  364 VFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFD------------RKLKNTY--DHLLFSRSPLLSVYADMSVTCKE-YYSPNQ-SMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSG-KLCAQAIVQDSELLATRGQ 561          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.770e-22
Identity = 69/215 (32.09%), Postives = 113/215 (52.56%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYICNAGEELVALRKQ 631
            V A  V  FK L+P  W E+ +F  + +LVG+PV+ V + ++            R+L      D+LL++  +    +AD+++T  E  Y +   S+L+ V  P D ++   + EII    +E+  LFP     +     ++   +VK  +S+++  P  +P RP Q++P++  +LAG YTKQ Y+ SMEGA LSG+  +  I      L ALR Q
Sbjct:  362 VCATPVDIFKLLVPQEWSEITYFKKLEKLVGVPVINVHIWFD------------RKLNNTY--DHLLFSRSSLLSVYADMSVTCKE--YYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRL-ALRSQ 559          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 69/211 (32.70%), Postives = 111/211 (52.61%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYICNAGEELVA 619
            V A  V   K LLP  W+E+ +F  + +LVG+PV+ V + ++            R+L+     D+LL++       +AD++LT  E  Y +   S+L+ V  P + ++   + +II    KE+  LFP     +     ++   VVK  +S+++  P  +P RP Q++P++  +LAG YTKQ Y+ SMEGA LSG+  S  I    E L A
Sbjct:  358 VFAAPVDILKLLLPDPWKEIPYFKKLDKLVGVPVINVHIWFD------------RKLKNTY--DHLLFSRSNLLSVYADMSLTCKE--YYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAA 552          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.388e-21
Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPS----SQGLEVIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYI 592
            V+A  V   K ++P+ WRE   F  I  L G+PV+ + L ++  +T++               D+LL++       +AD++ T  E  Y +   S+L+ VL P   ++   ++EI+     E+  LFP          ++ S VVK  +S+++  PG+   RPDQ+T V N +LAG +T Q Y+ SMEGA LSG++ +  I
Sbjct:  270 VSAMPVDPLKTMVPAPWREYPEFKQIQGLEGVPVINLHLWFDRKLTDI---------------DHLLFSRSPLLSVYADMSNTCRE--YSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAI 453          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.092e-21
Identity = 64/208 (30.77%), Postives = 105/208 (50.48%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGRKTSAYICNAGEEL 613
            V+A  V   K LLP  W+ M +F  +  L G+PV+ + L ++  +T++               D+LL++       +AD++ T  E  Y +   S+L+ V  P   ++   +++I+     E+  LFP     E    +    +VK   S+++  PG+  +RPDQ +P+ N FL G YT Q Y+ SMEGA LSG+ T+  I    +EL
Sbjct:  270 VSALPVDPLKLLLPDAWKAMPYFQQLDGLQGVPVINIHLWFDRKLTDI---------------DHLLFSRSPLLSVYADMSNTCRE--YEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDEL 460          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.038e-21
Identity = 62/196 (31.63%), Postives = 107/196 (54.59%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGR 574
            V A  V   K L+P  W+E+ +F  + +LVG+PV+ V + ++            R+L+     D+LL++  +    +AD+++T  E  Y +   S+L+ V  P + ++   + EII    +E+  LFP     +     ++   VVK  +S+++  P  +P RP Q++P++  +LAG YTKQ Y+ SMEGA LSG+
Sbjct:  370 VFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFD------------RKLKNTY--DHLLFSRSSLLSVYADMSVTCKE--YYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549          
BLAST of DY305777 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.038e-21
Identity = 62/196 (31.63%), Postives = 107/196 (54.59%), Query Frame = 2
Query:    2 VAACDVPGFKRLLPSLWREMKFFNNIYELVGLPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLYTPDADFPCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKEVLALFPSSQGLE-----VIWSSVVKIGQSLHREGPGKDPFRPDQKTPVKNLFLAGSYTKQDYIDSMEGATLSGR 574
            V A  V   K L+P  W+E+ +F  + +LVG+PV+ V + ++            R+L+     D+LL++  +    +AD+++T  E  Y +   S+L+ V  P + ++   + EII    +E+  LFP     +     ++   VVK  +S+++  P  +P RP Q++P++  +LAG YTKQ Y+ SMEGA LSG+
Sbjct:  370 VFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFD------------RKLKNTY--DHLLFSRSSLLSVYADMSVTCKE--YYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549          
The following BLAST results are available for this feature:
BLAST of DY305777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_CAPAN7.359e-2333.81Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN4.770e-2233.02Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE4.770e-2232.09Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH6.230e-2232.70Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNY31.388e-2131.84Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
CRTI_SYNE73.092e-2130.77Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]
CRTI_ORYSJ4.038e-2131.63Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI4.038e-2131.63Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BC04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305777 ID=DY305777; Name=DY305777; organism=Citrus sinensis; type=EST; length=977bp
GGTTGCTGCATGTGATGTCCCTGGATTTAAACGATTACTTCCATCATTGT
GGAGGGAAATGAAATTTTTCAACAATATTTATGAGCTAGTTGGATTGCCT
GTTGTGACAGTGCAGCTTAGATACAATGGTTGGGTTACTGAGTTGCAAGA
CCTAGAACGGTCAAGGCAATTGAGGCAAGCTCTGGGGTTAGATAATCTTT
TGTATACTCCAGATGCTGATTTCCCTTGCTTTGCAGATCTGGCACTCACT
TCACCAGAAGACTACTACAGAGAAGGGCAAGGTTCACTGCTCCAATGTGT
TTTAACACCTGGCGATCCTTACATGCCCTTACCAAATGATGAAATCATAA
GGAGAGTGGCAAAGGAGGTTTTGGCTCTATTTCCATCGTCCCAGGGTTTA
GAAGTTATTTGGTCATCTGTTGTCAAAATCGGGCAGTCTTTGCACCGTGA
GGGACCTGGTAAAGACCCCTTCAGACCTGATCAAAAGACACCAGTGAAGA
ACTTGTTCCTTGCTGGCTCATATACAAAACAGGATTACATAGATAGCATG
GAAGGAGCAACTTTGTCTGGTAGAAAAACCTCAGCATACATATGCAATGC
CGGGGAGGAATTAGTAGCACTGAGGAAGCAGCTTGCTGCCTTTGAATCTC
AAGAACAAATGGAAGCTCCGACTACTGATGATGAACTAAGTGTTGTCTGA
TCACAATCTGTTTGAGGCGTGGCAGCAGGAGTAAGGTTTTTCCACATCTA
AACGCCCTTCACTTTTACACAATATTACATGGATAGTATGGGATGAGGCA
TTTGCTGCCTTAATTTGAATCTCAAGAACAAAGGGAAATCCAGCTTTGAC
TGATGAACTTAGTAAATGATGGGGAGGGTGGGGCTGGGAATAAGGTTTTC
CAATACCCCTGTTATTTCCATGAAAATATCCGTTTTCCTAAATTTCTTAT
TTAAATTTATGGGACAGGGATTCAAAA
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