DY305751

Overview
NameDY305751
Unique NameDY305751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1057
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.900e-19
Identity = 78/247 (31.58%), Postives = 112/247 (45.34%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPQ 822
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A   GD  +  A    L ++G      N AAAY  GL++  +                          A  RR   A+LD+GL +   G RVF            IPH           G+++  +  R  I G HVA Y   L E+ PE Y++ F+ Y+++G++ + L   +++V   I  +   KK  K A Q
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPH-----------GEEVLPDEDR--IKGKHVAEYAEKLKEENPEAYKARFSRYLQRGLEPEKLPEHFEEVKKKI-VEYYEKKLAKVAAQ 205          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.242e-19
Identity = 67/231 (29.00%), Postives = 107/231 (46.32%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            ++VK++RRRE KTDYR R++L+   K        R V R T    IAQIV  +  GD  + +A++ EL + G +    N  +AY TG LL ++ L         +G  EA                  +LD+GL + T GN +F            IPH ++      +             I G H+ AY   L E + E+Y+  F++Y++KG++ + L   ++++ A I
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTEA------------------VLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPSEER-------------IRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.234e-19
Identity = 70/236 (29.66%), Postives = 109/236 (46.19%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R+++ ++RRREGKTDYRAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH +      S+             I G H+  Y  +L E+E  K    F++Y+++G+    L   + ++   I
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGESVLPDESR-------------IRGEHIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.609e-18
Identity = 71/232 (30.60%), Postives = 105/232 (45.26%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V ++RRREG T+YR R RLI   K        R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH           G+++  E  R  + G HVA Y + L E+ PE Y++ F+ Y+++G+  + L   +++V   I
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.584e-18
Identity = 68/238 (28.57%), Postives = 104/238 (43.70%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRA 783
            A+   ++VKY+RRREGKT+Y  R   +    +       R VVR TNK +I Q V  +  GD  +AAA++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   + G H+A Y   L +++P+KY+  F+ Y+ +G+D   L A +K+V  +I++
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKK--------AGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEVLNSIKS 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.985e-18
Identity = 67/235 (28.51%), Postives = 112/235 (47.66%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH +             + +     + G H+A Y + L +  PE Y+  F++Y+ +G++ + +    ++V + I
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPENISKHIEEVKSKI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 74/229 (32.31%), Postives = 103/229 (44.98%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKV 765
            R++V  +RRREGKT+Y  R +++            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF            +P  ++      +             I G H+A++   L E  PE Y+  F++YI +G D   L   +++V
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 67/232 (28.88%), Postives = 104/232 (44.83%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V ++RRREG T+YR R +L+   K        R VVR TNK +IAQIV A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH +             +     + I G HVA Y   L E+ PE Y++ F+ Y+++G+  + L + +++V   I
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 69/221 (31.22%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 744
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 69/221 (31.22%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 744
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
The following BLAST results are available for this feature:
BLAST of DY305751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL18_PYRAE1.900e-1931.5850S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_METJA3.242e-1929.0050S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_METTH4.234e-1929.6650S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_THENV1.609e-1830.6050S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METS53.584e-1828.5750S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_CALMQ7.985e-1828.5150S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_STAMF1.043e-1732.3150S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_PYRCJ1.043e-1728.8850S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_METM71.043e-1731.2250S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM61.043e-1731.2250S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305751 ID=DY305751; Name=DY305751; organism=Citrus sinensis; type=EST; length=1057bp
CTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCTTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAATACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCGAAGGATGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTATCAATCTC
ACTTCACCGAGTACATCAAGAAAGGAATTGATGCTGATGGCTTGGAGGCA
CTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCTACAATGAAGAA
ATCTGAGAAGCCAGCTCCCCAAGAACATAAAAGGTATATTTTGAAAAACC
TTATTTACAAGAAAGGGAAGGCAAACCTGGTTAAAAGGCTAAATGCCTTA
ACCTCGGCAGTTGATGAGGAGGACGAAATGAAACCTCCTAACCAAAAAAG
AATTCAAATAAGTGGCCAAATCCGCCATAACAATTTGTTTGTTCCTTTTG
CAAAAAACTAAAAAAGTTTCCTTTTTCCCCTTTTTTTTATTTTTTTTTTT
TTTTTTT
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