DY305751

Overview
NameDY305751
Unique NameDY305751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1057
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.043e-17
Identity = 71/233 (30.47%), Postives = 104/233 (44.64%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V  +RRREGKT+Y  R RL+   K        R  VR +N+ +  Q + A I GD V+AAA++ EL  ++G +    N  AAY TG L   R L+                          +    A+LDVGL K   G+RVF            IPHS++   G        D  V  +     H+A +   L E+  E YQ  F+ Y+ +G++ + L    ++V  AI
Sbjct:    6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG--------DERVRCE-----HIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.779e-17
Identity = 69/234 (29.49%), Postives = 103/234 (44.02%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRA 783
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++            +PHS +      +             I G H+A++   L  +E    +  F++Y+++G D   +   ++ V   I A
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDR-------------IRGEHIASFAEKL--EEEGSLERQFSDYLRRGADPKIISEAFESVLERISA 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.034e-17
Identity = 72/239 (30.13%), Postives = 109/239 (45.61%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRA 783
            A+   ++VKY+RRREGKT+Y  R   +  +         R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F            IP  D    G  +D            I G H+A+Y   L  + PE ++  F++Y+++G+    L + ++++   I++
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDLPSHFEEILNKIKS 193          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.034e-17
Identity = 65/232 (28.02%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQ+V A   GD  +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH ++      +             I G H+A Y   L ++ PE Y++ F+ Y+++G+  + L   +++V   I
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEVKKKI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.034e-17
Identity = 69/221 (31.22%), Postives = 105/221 (47.51%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 744
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ++S +  GD VL +A+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D           ++ AE  R  + G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.034e-17
Identity = 73/223 (32.74%), Postives = 102/223 (45.74%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEA 750
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     S+             I G H+AAY     E  PE+    F EY K+G+    L A
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPER----FGEYEKRGLKPSDLPA 176          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.963e-17
Identity = 68/236 (28.81%), Postives = 106/236 (44.92%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT YR R++L+   K        R VVR  N +I+AQ+V  +  GD V+   +++ L +YG +    N  +AY  GL+     LK                          R    A+LD+G  K+T GN ++            IPHS+       +             I G H+A Y   L E+E E Y+  F+ Y+K+G+D + L   +++V   I
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.759e-17
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 570
            R+ V ++RRREG+T+Y AR RL+   K        R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF            IPH+++
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.828e-17
Identity = 68/221 (30.77%), Postives = 105/221 (47.51%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 744
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH DK  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.153e-16
Identity = 66/215 (30.70%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 729
            ++V ++RRREGKTDY AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ +      S+             I G HVA Y  +L +DE  K    F++Y+++G+
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESR-------------INGEHVANYAESLDDDEIAKL---FSKYLERGL 172          
The following BLAST results are available for this feature:
BLAST of DY305751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL18_AERPE1.043e-1730.4750S ribosomal protein L18P OS=Aeropyrum pernix GN=... [more]
RL18_KORCO1.779e-1729.4950S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_SULTO3.034e-1730.1350S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_PYRIL3.034e-1728.0250S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_METM53.034e-1731.2250S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_ARCFU3.034e-1732.7450S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_NANEQ3.963e-1728.8150S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_METHJ6.759e-1736.8150S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METMP8.828e-1730.7750S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METS31.153e-1630.7050S ribosomal protein L18P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305751 ID=DY305751; Name=DY305751; organism=Citrus sinensis; type=EST; length=1057bp
CTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCTTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAATACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCGAAGGATGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTATCAATCTC
ACTTCACCGAGTACATCAAGAAAGGAATTGATGCTGATGGCTTGGAGGCA
CTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCTACAATGAAGAA
ATCTGAGAAGCCAGCTCCCCAAGAACATAAAAGGTATATTTTGAAAAACC
TTATTTACAAGAAAGGGAAGGCAAACCTGGTTAAAAGGCTAAATGCCTTA
ACCTCGGCAGTTGATGAGGAGGACGAAATGAAACCTCCTAACCAAAAAAG
AATTCAAATAAGTGGCCAAATCCGCCATAACAATTTGTTTGTTCCTTTTG
CAAAAAACTAAAAAAGTTTCCTTTTTCCCCTTTTTTTTATTTTTTTTTTT
TTTTTTT
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