DY305751

Overview
NameDY305751
Unique NameDY305751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1057
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.569e-16
Identity = 71/237 (29.96%), Postives = 107/237 (45.15%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ VF            +PHS + F            E +R  I G H+A Y   L E + EK++  F  Y++KG+D + L   + +V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.381e-16
Identity = 68/232 (29.31%), Postives = 111/232 (47.84%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ + L   ++++   I
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.381e-16
Identity = 68/232 (29.31%), Postives = 111/232 (47.84%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ + L   ++++   I
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.722e-16
Identity = 70/237 (29.54%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR +    IAQIV  +  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHS++ +            E +R  I G H+A Y   L E++  KY+  F+ Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIYP-----------EDYR--ITGEHIANYAKALKEEDEGKYRKQFSSYLVKGLEPEKLPEHFEEVKARI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.473e-16
Identity = 69/237 (29.11%), Postives = 104/237 (43.88%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+                        Y  + A       A+LD+GL     G+ VF            +PHS + F    +             I G H+A Y   L E + EK++  F  Y+ KG+D + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.761e-16
Identity = 69/237 (29.11%), Postives = 106/237 (44.73%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR T    +AQIV     GD  + +A+  EL R +G +    N  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F            +PHS++ + G              + I G H+A Y   L ED+ E Y+  F  Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPEKLPEHFEEVKARI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 9.761e-16
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ +F            +PHS + F            E +R  I G H+A Y   L E + ++++  F  Y++KG+D + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLPEHFEEVKARI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.275e-15
Identity = 68/232 (29.31%), Postives = 100/232 (43.10%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V  KRRREGKT+Y  R +LI   K        R VVR  ++  I QI  A   GD V+A+A+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  D       +D +          + G H+A Y   L E  PE ++  F+ Y+  G+D + L   +  V   I
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPEHFDSVKQKI 191          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.665e-15
Identity = 68/233 (29.18%), Postives = 106/233 (45.49%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            R++V ++RRREGKT+Y  R++L+        + K R VVR +    IAQI+  N  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF            +PHS++ F            E +R  I G HVA Y   L +++   Y+  F  Y+ KG++ + L   +++V A I
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVKGLEPEKLPEHFEEVKAKI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.665e-15
Identity = 72/246 (29.27%), Postives = 106/246 (43.09%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA 816
            R++V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q++     GD V+AAA++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  D                     I G H+A+Y  +L  + PE+YQ  F + +++G+  +     +++V A I  D    K E+PA
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED---YKVEQPA 201          
The following BLAST results are available for this feature:
BLAST of DY305751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL18_PYRAB2.569e-1629.9650S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_METVS4.381e-1629.3150S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA4.381e-1629.3150S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_THEON5.722e-1629.5450S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_PYRFU7.473e-1629.1150S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]
RL18_THESM9.761e-1629.1150S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_PYRHO9.761e-1628.6950S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_THEPD1.275e-1529.3150S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_THEGJ1.665e-1529.1850S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_IGNH41.665e-1529.2750S ribosomal protein L18P OS=Ignicoccus hospitali... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305751 ID=DY305751; Name=DY305751; organism=Citrus sinensis; type=EST; length=1057bp
CTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCTTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAATACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCGAAGGATGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTATCAATCTC
ACTTCACCGAGTACATCAAGAAAGGAATTGATGCTGATGGCTTGGAGGCA
CTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCTACAATGAAGAA
ATCTGAGAAGCCAGCTCCCCAAGAACATAAAAGGTATATTTTGAAAAACC
TTATTTACAAGAAAGGGAAGGCAAACCTGGTTAAAAGGCTAAATGCCTTA
ACCTCGGCAGTTGATGAGGAGGACGAAATGAAACCTCCTAACCAAAAAAG
AATTCAAATAAGTGGCCAAATCCGCCATAACAATTTGTTTGTTCCTTTTG
CAAAAAACTAAAAAAGTTTCCTTTTTCCCCTTTTTTTTATTTTTTTTTTT
TTTTTTT
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