DY305751

Overview
NameDY305751
Unique NameDY305751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1057
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.665e-15
Identity = 71/235 (30.21%), Postives = 100/235 (42.55%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRAD 786
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP  Y   F        DA  L A + +   AI  D
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.665e-15
Identity = 71/235 (30.21%), Postives = 100/235 (42.55%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRAD 786
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP  Y   F        DA  L A + +   AI  D
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.174e-15
Identity = 69/237 (29.11%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 777
            A+  R++V ++RRREGKT+Y  R++L+        + K R VVR T    IAQIV  +  GD  L +A+  EL R +G +    N  +AY  GLL+                        Y  + A       A+LD+GL   T G+ +F            +PHS+           ++  E +R  I G H+A Y   L E++   Y+  F+ Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPEHFEEVKAKI 192          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.174e-15
Identity = 68/236 (28.81%), Postives = 106/236 (44.92%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRAD 786
            R++V ++RRREGKT+Y  R  LI  D         R V R T    IAQIV     GD  LA+A++ EL  ++G +    N  AAY TG L   R L         E  +E                 RA++D+GL +   G+RVF            IPH ++      +             I G H+A     + E++PE+Y+  F++Y+++G+  + L   +++V + I  +
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.263e-15
Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 657
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.409e-14
Identity = 66/225 (29.33%), Postives = 92/225 (40.89%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED------EPEKYQSHFTEYIKKGIDAD 738
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + +               G H+A Y   L E       +      HF E  +  +D D
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGD 184          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.101e-14
Identity = 61/234 (26.07%), Postives = 100/234 (42.74%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRA 783
            ++VK +RRREGKT+Y  R   +   +        RF+VR TNK +I QI   +  GD ++A+A++ EL  ++G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+++G++ + L + ++++   I++
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENLPSHFEEILNKIKS 196          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.101e-14
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 567
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.136e-14
Identity = 62/217 (28.57%), Postives = 92/217 (42.40%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGID 732
            +++K++RRREGKTDY  R   +  +         RFV R TNK +I  +   +  GD ++A A++ EL  +YG +    N  AAY TG L   R +K           V+A                 A+ D+GL     G R+F            +P  D         GK  D       + G H++AY   L  +  E Y   F+ YI++G+D
Sbjct:    7 YRIKFRRRREGKTDYYTRYTYVINNA-------IRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGLD 176          
BLAST of DY305751 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.136e-14
Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS 699
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G +VF            +PH ++      +             + G H+AAY      D  E  +S
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVES 165          
The following BLAST results are available for this feature:
BLAST of DY305751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL18_HALSA1.665e-1530.2150S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS31.665e-1530.2150S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_PYRKO2.174e-1529.1150S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_METKA2.174e-1528.8150S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_METB68.263e-1531.7750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_HALMA1.409e-1429.3350S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_SULSO4.101e-1426.0750S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_METMJ4.101e-1434.5750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_SULAC9.136e-1428.5750S ribosomal protein L18P OS=Sulfolobus acidocald... [more]
RL18_METPE9.136e-1431.0750S ribosomal protein L18P OS=Methanosphaerula pal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305751 ID=DY305751; Name=DY305751; organism=Citrus sinensis; type=EST; length=1057bp
CTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCTTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAATACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCGAAGGATGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTATCAATCTC
ACTTCACCGAGTACATCAAGAAAGGAATTGATGCTGATGGCTTGGAGGCA
CTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCTACAATGAAGAA
ATCTGAGAAGCCAGCTCCCCAAGAACATAAAAGGTATATTTTGAAAAACC
TTATTTACAAGAAAGGGAAGGCAAACCTGGTTAAAAGGCTAAATGCCTTA
ACCTCGGCAGTTGATGAGGAGGACGAAATGAAACCTCCTAACCAAAAAAG
AATTCAAATAAGTGGCCAAATCCGCCATAACAATTTGTTTGTTCCTTTTG
CAAAAAACTAAAAAAGTTTCCTTTTTCCCCTTTTTTTTATTTTTTTTTTT
TTTTTTT
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