DY305749

Overview
NameDY305749
Unique NameDY305749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305749 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.466e-11
Identity = 48/164 (29.27%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  243 HIVHHFGTSGLAVAVATAVTHPLDVLKVRLQMQFVGQ-KGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYE--PSKYACDWAFGSTN--ILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMK---QSGSIAEMRRLISEEGIRALWKG 710
            H+   F    LA A A  + +P++VLK RL ++  GQ KG L+   R    IL++EGP++ Y G  P +   I Y G+ L +YE   +++   ++  S N  ILV +             + P  +++ R+Q  +S++   Q   +  +R ++S+EG+  L++G
Sbjct:  277 HVQERFVAGSLAGATAQTIIYPMEVLKTRLTLRRTGQYKGLLDCAKR----ILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESANPGILVLLGCGTISSTCGQIASYPLALVRTRMQAQASIEGGPQVSMVGLLRHILSQEGVWGLYRG 436          
BLAST of DY305749 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.324e-11
Identity = 52/166 (31.33%), Postives = 74/166 (44.58%), Query Frame = 3
Query:  234 TPSHIVHHFGTSGLAVAVATAVTHPLDVLKVRLQMQFVGQ-KGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQ------MNSSMKQSGSIAEMRRLISEEGIRALWKG 710
            TP   +  F   GLA  +++A THP+D LKVR+Q+Q  G   GP  G  ++ + I + EG  +LY GL+ +L R   Y   R GLY+  K              KI            +  P ++  VR+Q       N           + R+  EEGI +LWKG
Sbjct:   20 TPQSQLKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEGTGVGPKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIKDIVAKDDKPLPFTQKIMVGMLSGAGGAIVGTPADLTMVRMQADGKLPFNLRRNYKNVFDGIFRISKEEGIISLWKG 185          
BLAST of DY305749 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 9.379e-11
Identity = 47/168 (27.98%), Postives = 70/168 (41.67%), Query Frame = 3
Query:  231 TTPSHIVHHFGTSGLAVAVATAVTHPLDVLKVRLQMQFVGQKG-PLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGS-TNILVKIXXXXXXXXXXXXLTNPTEVLKV------RLQMNSSMKQSGSIAEMRRLISEEGIRALWKG 710
            T+P  +   FG  GLA   AT    PLD++K R+Q+   G K           + IL+ EG + +Y GL+  L R   Y   RLG+Y         A G+    L+K             +  P EV  +      RL ++           + R++ EEG+  LW+G
Sbjct:   18 TSPKSVKFLFG--GLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRG 183          

HSP 2 Score: 30.8018 bits (68), Expect = 9.379e-11
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 2
Query:  767 YDESKRILIRWTPS*EGFHLHLISSAVAGTMNTLITAPVDMVKTR 901
            Y +SK+ L+      +    H  +S ++G + T  + PVD+VKTR
Sbjct:  202 YSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTR 246          
The following BLAST results are available for this feature:
BLAST of DY305749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SCMC3_MOUSE5.466e-1129.27Calcium-binding mitochondrial carrier protein SCaM... [more]
M2OM_DICDI9.324e-1131.33Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_BOVIN9.379e-1127.98Mitochondrial 2-oxoglutarate/malate carrier protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AG02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305749 ID=DY305749; Name=DY305749; organism=Citrus sinensis; type=EST; length=1275bp
GCAGAAAACTAATATAGGAAATGCACAAGCTATCACCTGCGATTCTTTGC
AACTGAAATCGGGTATGACGTGTCTTATGTGCGGCTATTTTCCCTCCTCC
TAACGCCCAATCTTTTCTCCGACAGTAAATTGCCCGAACTAATCAAAACA
TGAGCGTGAATTCTTCGGCTCCGCTTTCAGGACCAGTGGCTGTTGAAGTA
AAAGTTGGTGAGAAGCAGAAGAATTGGTCGACGACGCCATCCCATATTGT
TCATCACTTTGGTACCAGCGGACTGGCTGTTGCAGTTGCCACTGCTGTCA
CTCATCCTCTAGATGTACTCAAAGTCAGGCTGCAAATGCAATTTGTTGGT
CAGAAAGGTCCCTTGAATGGAATGGGACGATTATTTCTCCAAATATTGAA
AAAAGAAGGTCCAAAGTCTTTGTATCTGGGATTGACTCCTGCTCTGACAA
GGTCAATTTTGTATGGTGGTCTACGTTTAGGCTTGTATGAGCCCTCAAAG
TATGCATGTGATTGGGCATTCGGGTCCACCAATATCTTGGTTAAAATTGC
ATCTGGAGCATTTGCTGGTGCCACTGCTACTGCACTTACCAATCCAACTG
AAGTCCTGAAGGTGCGGCTGCAGATGAATTCCAGCATGAAACAAAGTGGA
TCGATTGCAGAAATGCGAAGACTTATTTCTGAGGAAGGAATAAGAGCTCT
ATGGAAAGGGGGGTTGGTCCTGCTATGGCAAGAGCTGCTGCTTTAACTGC
CTCACAGCTAGCAACATATGATGAATCCAAGCGGATATTGATCAGGTGGA
CGCCCTCTTGAGAAGGATTTCATTTACATCTCATCTCAAGTGCAGTCGCT
GGCACCATGAATACCCTCATAACTGCACCTGTTGACATGGTTAAAACCCG
GTCTAATGTTGCAACCAAAATTCTAAAAAAATTTGGAAGCTAATAAAAAT
GGATTTCATTGGGCATAACCAGGTTTGGGGTGAAAAGAAAGGCCCCCCCG
CCCTTTTATAAAAGGGGCCTTTTCCATTTTTTTTGCAAAATTGGGGTCCC
CAAAAGTAAAATTTAACCTTTATCCTTTTTGGGAAAAACCTAAAGGGAAC
CCTTGACGGGAATAAAATTGCAAACTCTTATTTTGGGGGGGGCTGTTCTC
TATATTTAAAATTTTTTTCAAAAAATTTTGTAACACCAAAAAATAATTTT
TTTTTGTTTTTAAAAAAAACCCCCAAAGAGGGGGAGTTTTTTCCCCCTCC
TCCACCCCCCCCCCCCCCCCCCCCC
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