DY305744

Overview
NameDY305744
Unique NameDY305744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SHIFL (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SHIF8 (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SHIDS (ATP-dependent Clp protease proteolytic subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SHIBS (ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL +ER++FL   VE  ++N ++  M++L  EN  KD+YL+INSPGG +  G++IYDTMQF++PDV TICMG AASMG+FLL AGA  KR   P++
Sbjct:   31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNS 131
The following BLAST results are available for this feature:
BLAST of DY305744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SHIFL1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIF81.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIDS1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIBS1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTI1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALSV1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP1.756e-2553.47ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2AF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305744 ID=DY305744; Name=DY305744; organism=Citrus sinensis; type=EST; length=1276bp
GATAGCAAAAAAGAGACGTGGTATTGGGGTCATTTGTCTTATATGTGCAA
ATCAAAATCGGGCGAATCCTTACTCGGAGTAGAGCCTAAACCTAAAAAAA
TGGAAGAAGCCCATTCAATTCAGGAACAAGAAAATGGCATCGTGATTTTT
GGATCGGATCTCGATGAAAAAATACATCAATGAAAAGTTAGTTCGATAAG
TCGATAAGTTTAGTGAATTTCTTTTTTATATTAGAATATTATAGGTCTAG
GAAACCGGCTAAACTCAGCGTTCTTGAAAACCGGAAGAAAAGCCCCTCGA
TAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTAGGAGCTACACATTGATT
TGTTTTTCGCAAGTTTTGTTGAACCGTATGCATCAAAAGATGCCTGTACG
GCTCCGAAAGGATACTGTTTTATCCTAATCAACCGACTTTATCGAGAAAG
ATTACTTTTTTTAGGTCAAATGGTTGAGAGCGATATCTCGAATCAACTTA
TTGGTATTATGGTATATCTCAGTATAGAGAACGAGACCAAGGATTTGTAT
TTATTTATTAACTCTCCTGGCGGATGGGTAATACCCGGGATAGCAATTTA
TGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGAT
TGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAA
CGTCTAGCATTCCCTCACGCTTGGCGCCAATGAGTTTTTTATTTGAGAGA
AAAAAGAAGACTATGCCTTCGCCATATGAATTCTTAATATTAAGTAATAA
TAGCATGGCACTTCGAATTCGATATGAAATTGTTAAGTGTTTTTTTTTTT
TCAAAATATTTGATTATGTATCGAAGCAATAGTATGAGATAAAGAAGGGG
GTATTCCGAGTTTATCTTTCCTTATCGGAGGGCCTATTGCAGCGGCCACA
CACCTTTTTTCCAGCCCAAAGAGGGTCTTAACAATTAAACATTAAACAAG
AATTTAAGGGTATGGAAAAAAATACAAAAAATAAAAAAAAAAAGAATTAA
TTTTTGAATTTATTTTCTTTTTTTTTTTTTTTGATTTTAAAAAAAAAAAA
AAAAAAAAACTCTAAGGGGGGGGGGCCGGGGACACCCCATTTTCCCCCCC
CTTAAAAGGGGATATTTAAATATAAAAAATTTTCCCGGGGGGCCCCCGCC
CTTTTTTTTTTAAACAACCCCCCCCGGTGGGGGGGCGGGGGGGGAAAAAA
AACCCCCCCCGGGGGGGTGTTGTTTT
back to top