DY305744

Overview
NameDY305744
Unique NameDY305744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_PSEFS (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain SBW25) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL +ER++FL   VE  ++N +   +++L  EN  KD++L+INSPGG V  G++IYDTMQF++P+V T C+G A SMG+FLL AGA  KR   P++
Sbjct:   36 IYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNS 134          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_LACBA (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 47/99 (47.47%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL ++R++ L   +E D++N +I  +++L  ++ TKD+ L+INSPGG V  G+AIYDTM F++ DVQTI +G+AASM S L ++G   KR A PHA
Sbjct:   20 IYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHA 118          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_BUCAP (ATP-dependent Clp protease proteolytic subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 44/99 (44.44%), Postives = 73/99 (73.74%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL +ER++F+   +E ++++ ++  M++L  E+  KD++L+INSPGG +  G++IYDTMQF++PDV TIC+G A SM +FLL++G   KR   P+A
Sbjct:   24 IYSRLLKERIIFITGTIEDNMASSIVAQMLFLEAESLDKDIFLYINSPGGIITSGMSIYDTMQFIKPDVNTICIGQACSMAAFLLSSGTKGKRSCLPNA 122          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_BDEBA (ATP-dependent Clp protease proteolytic subunit OS=Bdellovibrio bacteriovorus GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  374 PYASKDACTAPKGYCFILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPH 718
            PY  +      + Y   + +RL ++R++ LG  V  +++N +I  M++L ++N  K ++L+INSPGG V  G+AIYD MQFV+ DV T CMG+AASMGS LL AG    R + P+
Sbjct:   16 PYVIEQTSKGERSYD--IYSRLLKDRIIILGTAVTDEVANSIIAQMLFLEVDNPEKPIHLYINSPGGSVSAGLAIYDFMQFVKCDVATYCMGMAASMGSLLLTAGTKGMRYSLPN 128          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  374 PYASKDACTAPKGYCFILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFP 715
            PY  +      + Y   +I+RL ++R++ LG  ++ D++N ++  +++L  E+  KD+ L+INSPGG V  G+AIYDTMQ+V+  V TIC+G AASMG+ LL AGA  KR A P
Sbjct:    7 PYVIEQTHRGERSYD--IISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALP 118          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_MYCPA (ATP-dependent Clp protease proteolytic subunit 2 OS=Mycobacterium paratuberculosis GN=clpP2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  434 RLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            RL  ER++FLG  V  D++N+L   ++ L+ E+ TKD+ L+INSPGG +  G+AIYDTM     D+ T  MG+AASMG FLLAAG   KR A PHA
Sbjct:   20 RLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHA 115          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_BRAJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Bradyrhizobium japonicum GN=clpP2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL +ER++FL   VE  +S  ++  +++L  EN  K++ ++INSPGG V  G+AIYDTMQF+RP V T+C G AASMGS LLAAG    R + P+A
Sbjct:   28 IFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNA 126          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP1_BURXL (ATP-dependent Clp protease proteolytic subunit 1 OS=Burkholderia xenovorans (strain LB400) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.427e-21
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL RER++FL   V    ++ ++  +++L  EN  KD+  +INSPGG V  G+AIYDTMQF++P+V T+C G AASMG+FLL AG   KR A P+A
Sbjct:   30 IYSRLLRERIVFLVGPVNEQSASVIVAQLLFLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNA 128          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.476e-21
Identity = 46/99 (46.46%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL ++R++FLG  ++  ++N ++  +++L  E+  KD+ L+INSPGG V  G+AIYDTMQ+++ DV TIC+G AASM + LLA+G   KR A P+A
Sbjct:   24 IYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNA 122          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_RICFE (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia felis GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.476e-21
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RL +ER++F+   VE  ++N ++  +++L  EN  KD+Y++INSPGG V  G+AIYDTMQ+++P V T+C+G A SMGS LL  G    R + PH+
Sbjct:   20 IYSRLLKERIIFVCSTVEDHMANLVVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHS 118          
The following BLAST results are available for this feature:
BLAST of DY305744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSEFS3.427e-2148.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACBA3.427e-2147.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BUCAP3.427e-2144.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BDEBA3.427e-2143.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA3.427e-2144.74ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_MYCPA3.427e-2153.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BRAJA3.427e-2149.49ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BURXL3.427e-2149.49ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THELT4.476e-2146.46ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICFE4.476e-2145.45ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305744 ID=DY305744; Name=DY305744; organism=Citrus sinensis; type=EST; length=1276bp
GATAGCAAAAAAGAGACGTGGTATTGGGGTCATTTGTCTTATATGTGCAA
ATCAAAATCGGGCGAATCCTTACTCGGAGTAGAGCCTAAACCTAAAAAAA
TGGAAGAAGCCCATTCAATTCAGGAACAAGAAAATGGCATCGTGATTTTT
GGATCGGATCTCGATGAAAAAATACATCAATGAAAAGTTAGTTCGATAAG
TCGATAAGTTTAGTGAATTTCTTTTTTATATTAGAATATTATAGGTCTAG
GAAACCGGCTAAACTCAGCGTTCTTGAAAACCGGAAGAAAAGCCCCTCGA
TAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTAGGAGCTACACATTGATT
TGTTTTTCGCAAGTTTTGTTGAACCGTATGCATCAAAAGATGCCTGTACG
GCTCCGAAAGGATACTGTTTTATCCTAATCAACCGACTTTATCGAGAAAG
ATTACTTTTTTTAGGTCAAATGGTTGAGAGCGATATCTCGAATCAACTTA
TTGGTATTATGGTATATCTCAGTATAGAGAACGAGACCAAGGATTTGTAT
TTATTTATTAACTCTCCTGGCGGATGGGTAATACCCGGGATAGCAATTTA
TGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGAT
TGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAA
CGTCTAGCATTCCCTCACGCTTGGCGCCAATGAGTTTTTTATTTGAGAGA
AAAAAGAAGACTATGCCTTCGCCATATGAATTCTTAATATTAAGTAATAA
TAGCATGGCACTTCGAATTCGATATGAAATTGTTAAGTGTTTTTTTTTTT
TCAAAATATTTGATTATGTATCGAAGCAATAGTATGAGATAAAGAAGGGG
GTATTCCGAGTTTATCTTTCCTTATCGGAGGGCCTATTGCAGCGGCCACA
CACCTTTTTTCCAGCCCAAAGAGGGTCTTAACAATTAAACATTAAACAAG
AATTTAAGGGTATGGAAAAAAATACAAAAAATAAAAAAAAAAAGAATTAA
TTTTTGAATTTATTTTCTTTTTTTTTTTTTTTGATTTTAAAAAAAAAAAA
AAAAAAAAACTCTAAGGGGGGGGGGCCGGGGACACCCCATTTTCCCCCCC
CTTAAAAGGGGATATTTAAATATAAAAAATTTTCCCGGGGGGCCCCCGCC
CTTTTTTTTTTAAACAACCCCCCCCGGTGGGGGGGCGGGGGGGGAAAAAA
AACCCCCCCCGGGGGGGTGTTGTTTT
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