DY305744

Overview
NameDY305744
Unique NameDY305744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_PINTH (ATP-dependent Clp protease proteolytic subunit OS=Pinus thunbergii GN=clpP PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.275e-30
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            L NRLYRERLLFL Q +  +I+NQL+G+MVYLS E+  KD++ FIN PGG VIPG+ ++D MQ + PDV TICMG+AASMGSF+L  G   KR+A PHA
Sbjct:   23 LYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHA 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_PINKO (ATP-dependent Clp protease proteolytic subunit OS=Pinus koraiensis GN=clpP PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.275e-30
Identity = 62/99 (62.63%), Postives = 78/99 (78.79%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            L NRLYRERLLFL Q +  +I+NQL+G+MVYLS E+  KD++ FIN PGG VIPG+ ++D MQ + P+V TICMG+AASMGSF+L  G  TKR+A PHA
Sbjct:   23 LYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHA 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_MAIZE (ATP-dependent Clp protease proteolytic subunit OS=Zea mays GN=clpP PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 5.275e-30
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            L N +YRER LFLGQ +  +I+N + G+MVYLSIE+   D++LFINS GGW+I G+AI+DTMQ V PD+ TIC+G+AASM SF+L  G  TKR+AFPHA
Sbjct:   23 LYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSLGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHA 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.275e-30
Identity = 61/99 (61.62%), Postives = 81/99 (81.82%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + +RLYRER++FLG+ V+ +I+NQ+I +M+YL  E+  KD+YL+INSPGG V  G+AIYDTMQ ++ DV TIC+GLAASMGSFLLAAG   KR+A PH+
Sbjct:   23 IYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHS 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.535e-29
Identity = 61/99 (61.62%), Postives = 80/99 (80.81%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + NRLYRER++FLG+ V+ +I+NQ++ +M+YL  E+  KD+ L+INSPGG V  G+AIYDTMQ ++ DV TIC+GLAASMGSFLLAAG   KRLA PH+
Sbjct:   23 IYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHS 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_PINCO (ATP-dependent Clp protease proteolytic subunit OS=Pinus contorta GN=clpP PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.419e-29
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            L NRLYRERLLFL Q + ++I+NQL+G+MVYLS E+  K+++ FIN PGG VIPG+ +Y  MQ + PDV TICMG+AASMGSF+L  G   KR+A PHA
Sbjct:   23 LYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVGLYRMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHA 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_OLTVI (ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis GN=clpP PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.465e-29
Identity = 60/99 (60.61%), Postives = 80/99 (80.81%), Query Frame = 2
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            L NRLYRER+LFL Q ++ +++NQLIGIM+YL+ E ++KDLY++INSPGG V  GIA+YDTM +++ DV TIC+G AASM SF+LA G   KR+A PH+
Sbjct:   23 LYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKSKDLYIYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHS 121          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.617e-29
Identity = 60/101 (59.41%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL R+R++FLG  V+ DI+N ++  M+YL  E+  KD+YL+INSPGG V  G+AIYDTMQ ++PDV TIC+GLAASMG+FLLA GA  KR+A PHA
Sbjct:   16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHA 116          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.216e-28
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:  419 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            F + +RL R+R++FLG  V+ DI+N ++  M+YL  E+  KD+YL+INSPGG V  G+AIYDTMQ ++PDV TIC+GLAASMG+FLLA G   KR+A PHA
Sbjct:   16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHA 116          
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_MESVI (ATP-dependent Clp protease proteolytic subunit OS=Mesostigma viride GN=clpP PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.200e-27
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRER+LFLG+ ++ +++NQLIG+MV+L+ E++TK ++ +INSPGG +  G+ +YD +Q V  DV TICMGLAASM SF+LA G   +RL FPHA
Sbjct:   25 NRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNAGLGVYDMIQHVNVDVTTICMGLAASMASFILAGGTPGQRLMFPHA 121          
The following BLAST results are available for this feature:
BLAST of DY305744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PINTH5.275e-3062.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PINKO5.275e-3062.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MAIZE5.275e-3061.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANASP5.275e-3061.62Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_THEEB1.535e-2961.62ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PINCO3.419e-2961.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_OLTVI4.465e-2960.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJA7.617e-2959.41ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJB2.216e-2858.42ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_MESVI3.200e-2757.73ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305744 ID=DY305744; Name=DY305744; organism=Citrus sinensis; type=EST; length=1276bp
GATAGCAAAAAAGAGACGTGGTATTGGGGTCATTTGTCTTATATGTGCAA
ATCAAAATCGGGCGAATCCTTACTCGGAGTAGAGCCTAAACCTAAAAAAA
TGGAAGAAGCCCATTCAATTCAGGAACAAGAAAATGGCATCGTGATTTTT
GGATCGGATCTCGATGAAAAAATACATCAATGAAAAGTTAGTTCGATAAG
TCGATAAGTTTAGTGAATTTCTTTTTTATATTAGAATATTATAGGTCTAG
GAAACCGGCTAAACTCAGCGTTCTTGAAAACCGGAAGAAAAGCCCCTCGA
TAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTAGGAGCTACACATTGATT
TGTTTTTCGCAAGTTTTGTTGAACCGTATGCATCAAAAGATGCCTGTACG
GCTCCGAAAGGATACTGTTTTATCCTAATCAACCGACTTTATCGAGAAAG
ATTACTTTTTTTAGGTCAAATGGTTGAGAGCGATATCTCGAATCAACTTA
TTGGTATTATGGTATATCTCAGTATAGAGAACGAGACCAAGGATTTGTAT
TTATTTATTAACTCTCCTGGCGGATGGGTAATACCCGGGATAGCAATTTA
TGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGAT
TGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAA
CGTCTAGCATTCCCTCACGCTTGGCGCCAATGAGTTTTTTATTTGAGAGA
AAAAAGAAGACTATGCCTTCGCCATATGAATTCTTAATATTAAGTAATAA
TAGCATGGCACTTCGAATTCGATATGAAATTGTTAAGTGTTTTTTTTTTT
TCAAAATATTTGATTATGTATCGAAGCAATAGTATGAGATAAAGAAGGGG
GTATTCCGAGTTTATCTTTCCTTATCGGAGGGCCTATTGCAGCGGCCACA
CACCTTTTTTCCAGCCCAAAGAGGGTCTTAACAATTAAACATTAAACAAG
AATTTAAGGGTATGGAAAAAAATACAAAAAATAAAAAAAAAAAGAATTAA
TTTTTGAATTTATTTTCTTTTTTTTTTTTTTTGATTTTAAAAAAAAAAAA
AAAAAAAAACTCTAAGGGGGGGGGGCCGGGGACACCCCATTTTCCCCCCC
CTTAAAAGGGGATATTTAAATATAAAAAATTTTCCCGGGGGGCCCCCGCC
CTTTTTTTTTTAAACAACCCCCCCCGGTGGGGGGGCGGGGGGGGAAAAAA
AACCCCCCCCGGGGGGGTGTTGTTTT
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