DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.662e-18
Identity = 61/179 (34.08%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  164 TSSFCSPPCLTSCPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSS---SEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            T+S   PP     P   HNF  SL+P  + V              ++TA   +T ++     +++VK   RR  S   + P+    T       + G VV          G+  SVI  + V ++    G  +G EC+VCL+ F+  E LRLLPKC HAFH+ C+DTWL +H+ CPLCR
Sbjct:   31 TTSDTPPPLPPPSPPPRHNFTSSLMPGIAVV------------IAVLTAFFSLTFLL-----LLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGR----KNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 188          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.541e-18
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  290 KFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWES 754
            K ++ +   L   ++ +LC+  + ++  RR++    R ++  H   L     P         +   L  +V+ +I +  Y          ECSVCLSEF+ED+  R+LPKC H FH+ CIDTW RS ++CPLCR+P+          P ++ + S
Sbjct:   27 KIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRIS-AHLRSLAAARDPTQSSS----SLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPS 176          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.321e-17
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  464 IWYINTVGLQSSVIREIAVLKYKKSDGLVEGT-ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPS-------SSTWESNNEDSGTRES 784
            +++++  G+  S I  + V  YK   GL     +C+VCL EF+ ++ LRLLPKC+HAFH+ CIDTWL SH+ CPLCRS ++    + + P S       S++  S+ E  G R+S
Sbjct:  100 LFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDS 214          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.725e-17
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  224 LQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYV-----VFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGL-VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            L S  P P  +  K +    +    I     L+  I++++ ++     + VKF L     S      E + D +    G +    ++ ++  G+  S+I  + V  YK   GL +   +C VCL EF+ ++ LRLLPKC+HAFH+ CIDTWL SH+ CPLCRS ++
Sbjct:   14 LISSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESR-----EDYFDNVTALQGQL--QQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.253e-17
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESEIGAVERRNITKEMIKILMTRYNNKKISFL 925
            GL  + I  + + ++    G  +G +CSVCLS+F+  E LRLLPKC HAFHI CID WL  H  CPLCR  +     ++     +S    N  +     S ++ I  E         E+    R +I +   KIL  +  NK+ + L
Sbjct:   97 GLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFLNQSEIREDSSLELYIEREEEEERIHREELSGSSRFSIGESFRKIL--KLGNKEKTLL 241          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.943e-17
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  290 KFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKY--KKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            K ++ +   L   ++ +LC+  + ++  RR +    RI              P             L  +V+ +I +  Y  K      E  ECSVCLSEF+E++  RLLPKC H+FH+ CIDTW RS + CPLCR+P+
Sbjct:   27 KIMLSSVIVLFVAVIMILCFHSYARWLFRRHNR---RIRRRIRSHLRTLSASP---------RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.118e-16
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHA 718
            GL+   +++  V +Y   +  +  TEC++CL EF + E +R+LP CNH+FH+SCIDTWL SH++CP CR  +++++ A
Sbjct:   79 GLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVA 156          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.461e-16
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  299 IITASALVTTIVAVLCYV-----VFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGT----------ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESEIGAVER 856
            I  A   V  I+AVL ++     + V+F ++  S++     N    +    D        ++++N  GL  + I  + V  YK+  G   G           +C+VCL EF E + LRLLP C+HAFH++CIDTWL+S++ CPLCR  +     +   P         +E+           +TENG +  ME +   VE+
Sbjct:   41 ISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNR-FPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDEEG----------VTENGSQKTMEIQEIVVEK 230          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.461e-16
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  296 LIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKK-SDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 712
            L+I+  AL+   + VL Y++F   +LR+ S+  P I +  ++  L     P + H +++++  GL  + I  + V  Y   +  L +  +C+VCL+EF + + LRLLP C+HAFH+ CIDTWL S++ CPLCR  +   N
Sbjct:  122 LVISGLALIIVFLGVL-YLIFK--FLRKSSTLFP-IPHFNYNPDLFSFSSPQLQH-LFFLHDSGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.461e-16
Identity = 58/191 (30.37%), Postives = 85/191 (44.50%), Query Frame = 2
Query:  305 TASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGL---VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESEIGAVERRNIT 868
            T + ++  +V+V   +  +  Y+RR            H   +D   GP     +      GL +SVI       Y     L    E  EC VCL+EF++DETLRL+P+C H FH  CID WLRS T CPLCR+ +V +                    G   S+++  L    G+N + + I    +R +T
Sbjct:   38 TTAIIMIVLVSVFFALGCISVYMRRCLQ---------HALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPV-------------------PGESVSSEIPGLARETGQNSLRTPIDDNRKRVLT 200          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL5C_ARATH2.662e-1834.08RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL3L_ARATH4.541e-1830.97RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL4K_ARATH1.321e-1740.87RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL2C_ARATH1.725e-1733.13Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL4J_ARATH2.253e-1734.01RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL2N_ARATH2.943e-1733.81RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL5A_ARATH1.118e-1643.59RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL5I_ARATH1.461e-1629.85RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL3I_ARATH1.461e-1636.43RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL1C_ARATH1.461e-1630.37RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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