EY702597 | Citrus Genome Database

Overview


Name	EY702597
Unique Name	EY702597
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	871

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

[Close]

BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.286e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            MQIFVKTLTGKTITLEV  SD ++NVKAKIQDKEGIPPDQQRL FA KQLEDGRTL+DYN+ KE  LHLVL LRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 6.479e-26
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 283
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 44.669 bits (104), Expect = 6.479e-26
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            MQIFVKTLTGKTITLEVE SDTI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTI 23

The following BLAST results are available for this feature:

BLAST of EY702597 vs. ExPASy Swiss-Prot

BLAST of EY702597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_MACFA	1.286e-28	82.89	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	1.286e-28	82.89	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]
UBIQ_HUMAN	1.286e-28	82.89	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	1.286e-28	82.89	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	1.286e-28	82.89	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	1.286e-28	82.89	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_DROME	1.286e-28	82.89	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	1.286e-28	82.89	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	1.286e-28	82.89	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	1.286e-28	82.89	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-009-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702597 ID=EY702597; Name=EY702597; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGGAAGGAGTCATCCCTTCATCTCGTCCTCAGGCTCCGTGG
TGGTATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGG
AGGTGGAGAGTTCGGATACGATTGATAGGCGGGGGGGGCAGGATCCAGGA
CAAAGAGGGGATCCCGCCGGACCAGCAAAGATTGATCTTCGCCGGTAAGC
AGTTGGAAGATGGCCGCACCTTGGCCGATTACAACATTCAGAAAGAGTCA
ACTCTCCACCTTGTTCTTCGTCTCAGGGGAGGCATGCAGATATTTGTTAA
GACCCTTACTGGGAAAACAATTACTTTGGAAGTTCATAGCTCAGACGCGG
TTGACAATGTCAAGGCAAAAATCCAAGATAAGGAAGGAATTCCACCGGAT
CAGCAGCGTTTGACCTTCGCTCGCAAACAGCTTGAGGATGGAAGGACTCT
TGCGGATTATAACCTCCACAAGGAGGTCGCCCTTCATCTGGTTCTGCCCC
TGAGGGGGGGTATGCAGATACTTGTCAAGACCCTTGACTGGGAAGACTAT
TACTCTGGAGGTGGAGAGCTCCGATACTATTGATAATGTTAAGGCAAAGA
TTCAGGACAACGAAGGGCATTCCCCCAGATCCAGAAAGGCTCATCTTTCC
TGGAAACCACCTTGAAGGAGGGCCGTCTTTACCTGATTATCACTTTCCCA
AGGGGCCCCCCCTCCCTCTTCGGGCTCCCCCTTCTTGGGGGTGAATTCCT
AAAAGGGTATCTCCCTTGGCCGCCGGGCCGCCTCCCCCCCGCCTGCACCC
AAAAATCTATTTTCCCTGCGGGCGCCCCCCGTCCTCTTCCAACTCTTTGC
CCCAAGCTTTACCGCGCAAAC