EY702597

Overview
NameEY702597
Unique NameEY702597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.075e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            M + VKTLTGK I++E+  SD V ++K  +++KEGIPP QQRL F  KQ++D  T+ D +L + + LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.075e-14
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  284 MQIFVKTLTGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGGM 514
            M I VKTLTGK I +++  +D +  +K ++++KEGIPP QQRL F  KQ+ D +  ++Y++     LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          

HSP 2 Score: 62.7734 bits (151), Expect = 2.646e-11
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 2
Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 286
            ++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:   31 EEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          

HSP 3 Score: 26.9498 bits (58), Expect = 2.646e-11
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:   55 MQIFVKTLTGKTITLEVESSDTI 123
            M I VKTLTGK I ++++ +D I
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKI 23          
BLAST of EY702597 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  146 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVHSSDAVDNVKAKIQDKEGIPPDQQRLTFARKQLEDGRTLADYNLHKEVALHLVLPLRGG 511
            + K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S +V  VKA I+ K GI P+ Q +T   K+LEDG+ +ADY + K   L L     GG
Sbjct:   38 RSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
The following BLAST results are available for this feature:
BLAST of EY702597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RUB1_YEAST3.075e-1452.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
NEDD8_DICDI3.075e-1446.75NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBD_HUMAN9.260e-1135.16Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702597 ID=EY702597; Name=EY702597; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGGAAGGAGTCATCCCTTCATCTCGTCCTCAGGCTCCGTGG
TGGTATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGG
AGGTGGAGAGTTCGGATACGATTGATAGGCGGGGGGGGCAGGATCCAGGA
CAAAGAGGGGATCCCGCCGGACCAGCAAAGATTGATCTTCGCCGGTAAGC
AGTTGGAAGATGGCCGCACCTTGGCCGATTACAACATTCAGAAAGAGTCA
ACTCTCCACCTTGTTCTTCGTCTCAGGGGAGGCATGCAGATATTTGTTAA
GACCCTTACTGGGAAAACAATTACTTTGGAAGTTCATAGCTCAGACGCGG
TTGACAATGTCAAGGCAAAAATCCAAGATAAGGAAGGAATTCCACCGGAT
CAGCAGCGTTTGACCTTCGCTCGCAAACAGCTTGAGGATGGAAGGACTCT
TGCGGATTATAACCTCCACAAGGAGGTCGCCCTTCATCTGGTTCTGCCCC
TGAGGGGGGGTATGCAGATACTTGTCAAGACCCTTGACTGGGAAGACTAT
TACTCTGGAGGTGGAGAGCTCCGATACTATTGATAATGTTAAGGCAAAGA
TTCAGGACAACGAAGGGCATTCCCCCAGATCCAGAAAGGCTCATCTTTCC
TGGAAACCACCTTGAAGGAGGGCCGTCTTTACCTGATTATCACTTTCCCA
AGGGGCCCCCCCTCCCTCTTCGGGCTCCCCCTTCTTGGGGGTGAATTCCT
AAAAGGGTATCTCCCTTGGCCGCCGGGCCGCCTCCCCCCCGCCTGCACCC
AAAAATCTATTTTCCCTGCGGGCGCCCCCCGTCCTCTTCCAACTCTTTGC
CCCAAGCTTTACCGCGCAAAC
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