EY702591

Overview
NameEY702591
Unique NameEY702591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.704e-12
Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  174 AGTKKTNNDITSIASN-GGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            A T K      S AS    + + M VW P   K  ET S+LPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++     +P
Sbjct:   20 AATPKVVTSKRSFASTVANKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFP 143          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.729e-12
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET S+LPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++     +P
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFP 144          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.697e-11
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  216 SNG--GRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQ-LEKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            SNG   + + M VW P   K  ET SYLPPL D+ + K++ Y+LR+ W PC EF   ++ +V  ++       +  Y D RYWT  K  ++G  D +  L  +    + +P
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFP 136          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 3
Query:  243 KVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQ------LEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGV 500
            KVW P   K+ ET SYLPPL ++ + +++ Y++ +GW PC EF       +      R    S  YYD RYWT  K  ++G TD +  L  V
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREV 121          
The following BLAST results are available for this feature:
BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS4_ACEAT5.704e-1233.87Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACEAT9.729e-1235.64Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_BATOE3.697e-1134.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CHLMO6.306e-1138.04Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC
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