DY305587

Overview
NameDY305587
Unique NameDY305587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1255
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305587 vs. ExPASy Swiss-Prot
Match: YGCU_ECOLI (Uncharacterized FAD-linked oxidoreductase ygcU OS=Escherichia coli (strain K12) GN=ygcU PE=3 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   18 LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG--PGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI-PQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLD 476
            + IE+M    + G+    L   L   G      P   P A +GG+ ATR  G  +  YG + D V+ L+ VLA+G V +  +  R+ AAG D+  +IIG+EG L  ITEVT+++ K  P++++        +K   ++    M+ G + S   L D
Sbjct:  111 IDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRR-AAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYD 265          
BLAST of DY305587 vs. ExPASy Swiss-Prot
Match: YGCU_ECO57 (Uncharacterized FAD-linked oxidoreductase ygcU OS=Escherichia coli O157:H7 GN=ygcU PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   18 LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG--PGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI-PQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLD 476
            + IE+M    + G+    L   L   G      P   P A +GG+ ATR  G  +  YG + D V+ L+ VLA+G V +  +  R+ AAG D+  +IIG+EG L  ITEVT+++ K  P++++        +K   ++    M+ G + S   L D
Sbjct:  111 IDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRR-AAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYD 265          
BLAST of DY305587 vs. ExPASy Swiss-Prot
Match: ADAS_RAT (Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   45 VEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIK 407
            VE GI   +L   L+  G     +P     + +GG  +TR SG     YG + D V+++K+V   G V++ +S+  + + G D+   I+GSEGTLG+ITE T++++  P++    +  FP  +
Sbjct:  264 VEAGITGQDLERQLKESGYCTGHEPDSLEFSIVGGWISTRASGMKKNVYGNIEDLVVHMKMVTPRG-VIEKSSQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFE 385          
BLAST of DY305587 vs. ExPASy Swiss-Prot
Match: ADAS_CAEEL (Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.089e-11
Identity = 45/155 (29.03%), Postives = 76/155 (49.03%), Query Frame = 3
Query:   27 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ 485
            E++    + GI    L   L   G     +P     +T+GG  +TR SG    +YG + D V++L  V   G + K     R S+ G D+ ++I+GSEGTLG+++EVT+++  IP+     +  FP  +   +      +   Q + + L+D  Q
Sbjct:  201 ENLTCRAQAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNFVCPKGIIQKQCQVPRMSS-GPDIHQIILGSEGTLGVVSEVTIKIFPIPEVKRFGSFVFPNFESGVNFFREVAIQRCQPASLRLMDNDQ 354          
The following BLAST results are available for this feature:
BLAST of DY305587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
YGCU_ECOLI1.835e-1132.05Uncharacterized FAD-linked oxidoreductase ygcU OS=... [more]
YGCU_ECO571.835e-1132.05Uncharacterized FAD-linked oxidoreductase ygcU OS=... [more]
ADAS_RAT2.397e-1132.52Alkyldihydroxyacetonephosphate synthase, peroxisom... [more]
ADAS_CAEEL4.089e-1129.03Alkyldihydroxyacetonephosphate synthase OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305587 ID=DY305587; Name=DY305587; organism=Citrus sinensis; type=EST; length=1255bp
GGAAAAGTGTTAAAGCATTACATATTGAGGACATGGATGTGGTTGTTGAG
CCTGGGATTGGATGGATGGAGCTTAATGAATACTTGGAGCCATATGGGTT
ATTCTTCCCTCTTGATCCTGGGCCTGGTGCAACCATTGGGGGTATGTGTG
CTACCCGCTGCTCTGGTTCCTTGGCTGTGAGGTATGGAACTATGCGCGAC
AATGTCATTAATCTGAAGGTAGTTCTTGCCAATGGAGATGTTGTTAAGAC
AGCTTCTCGTGCTCGAAAAAGTGCTGCAGGGTATGATTTGACCCGACTGA
TAATTGGAAGTGAGGGAACCCTTGGCATAATAACAGAAGTCACTCTAAGG
CTTCAGAAAATTCCACAGCATTCAGTGGTGGCAACATGTAACTTCCCAAC
TATTAAGGATGCAGCAGATGTAGCTATTGCTACTATGCTGTCTGGCATAC
AGGTGTCAAGGGTGGAGCTCCTGGATGAAGTTCAAGTGAGGGCTGTCAAT
ATTGCTAATGGGAAGAACTTGCCTGAACTTCCAACTTTGATGTTTGAATT
TATAGGCACTCAGGCATATTCACATGAGCAGACACTAATTGTTCAGAAGA
TTGTGTCTGAGCACAATGGTACTGATTTTATTTTTGCGGAAGATCCTGAA
GCTAAAAAGGAACTCTGGAAGATGAGAAAGGAGGCACTCTGGGCTTGCTT
TGCAATGGAGCCGAGTTTTGAAGCAATGATTTCTGATGTATGTGTTCCTC
TTTCTTGCCTGGCAGAATTGATATCAAGGTCCAAGAAAGAGCTTGATGCA
TCACCACTGATTTGCACTGTAATTGCTCATGCCCGTGATGGTAACTTTTC
CCACGGTGAACTATTTGATCCGAACCAAAAAAAGGAACGCAGAAAACCGA
ACGGTTAAATCGAATCATGGTCCCAACTGCCCTTGCCATGGAAGGAACTG
TAACTGTGAGCATGGATTTGGGACAGGAAAAAGAAATATCCAAAAAAGAA
CTAGGCCCTGAACCTTTGGAAAAAAAAAAAAAACAAAATACCCCTAAACC
CCCACAACTTCCTAAAATTCGGAAAGAGATATTCCCCCCATATTTGTTTT
CAAAATTTTTTTGGCAAAATTGGGTTCCAAAGGGAGTAAAACCTTCCCAC
ACGCGCCTCTTTTTTGGAAAAGAAATTTATAGAATCTTTATGGAGAAGAT
ATATCTTAACCCCCCCTCCTGTGGGGGGCGTCTTTAATTAAAAAAAATTA
ATAAA
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