DY305585

Overview
NameDY305585
Unique NameDY305585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1188
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.006e-19
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTF
Sbjct:   39 SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTF 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.006e-19
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTF
Sbjct:   39 SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTF 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.006e-19
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTF
Sbjct:   39 SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTF 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.967e-17
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + LP  E  ++LVP D++V QF+Y++  R+ LS  KA+F+FV+N LP T A+M ++Y+  KD+DGF+Y+ YS E TF
Sbjct:   38 TDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTF 114          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.775e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++ ++ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.318e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  685 ECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + +  +YLVP+DLTV QF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.318e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  685 ECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + +  +YLVP+DLTV QF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.318e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  685 ECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + +  +YLVP+DLTV QF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.318e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  685 ECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + +  +YLVP+DLTV QF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.318e-16
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  685 ECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + +  +YLVP+DLTV QF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVY 115          
The following BLAST results are available for this feature:
BLAST of DY305585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GBRL2_MOUSE1.006e-1955.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN1.006e-1955.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN1.006e-1955.84Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH7.967e-1748.05Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL1_PONAB1.775e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT2.318e-1653.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT2.318e-1653.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE2.318e-1653.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN2.318e-1653.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN2.318e-1653.42Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CB11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305585 ID=DY305585; Name=DY305585; organism=Citrus sinensis; type=EST; length=1188bp
GATTAACACTTGAGCTGCATTATTTGAAACAATTCTTGGTAGCAATCTCA
TCAACTTTACGTAGCACTCTCATTCCTTTCTTTTCTAAGGTATATTGATC
TCATTCCTCTGTGGTAAGGGGCAGCCAGCAGAGTATGGCAACCTCTTACT
TGTGCTACTTTGTTTGTAATATTACCATAGTTTTCATTGTTATCTTATAT
TGTTCTTCCTGTTTCATTTAGCTGATCACATGGCTCTGTCATGTGAGTCT
GCATACATCCTATGACAGCTTCTTGCAGCTATTTTCTTTGTGGGTCTTGC
TAGCTTACAGTTTTTGTATATTACAGCCCATAAAGAAGGGGCGTTAACTG
GCCCTCATCCAGTTACCCCTTTTGGCCTGGCTGTACATTACAGTAAATGT
AAGGTAGCCATGTCTTTTTTCCATTTTTTTCCTTTATATTTGAGATTAAA
ACCTAAGACCTAATCAAAATTTAGTCATTCATTTGTTTACCTGATAATCA
TCATATCTATTACTTCTTTTTCTTTGTCGCATTTCTTTGAAAGATCATTG
TATTTGTAGAATTGGCTGTCGCTTCAGTGTTTATAGTTGCTATCATTGCT
GACAGATGGTAATTTAAATGTCCATATGGACTATAACAACTCGCTACTTG
ATTCTATCATACTAATAAGGTTTCCTCTTTACCTGAATGTGAAAATTACA
GGTATCTTGTTCCAGCTGACCTGACTGTANGACAATTTGTCTATGTCATC
CGTAAAAGGATCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGA
TAATGTGCTCCCACCTACAGGTGCAATTATGTCTGCCATATACAAGGAAA
AAAAGGATGAAGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACA
TTTGAAACCACATCCCAGTTTACCCTTGGAATATTATTCGCCTCTTGTGT
GGGTTCCTGTGGCGACCACATTTTATCTTATTAACATCCTTGCTTTCCGC
CTATAATTCCTTTATCGGGCAAATTTATTATTTAAAAAAAAATGGCCCGT
AAAAAATGAACGGTTACTAATGTTAATAAATTCTAAAGGCAAAAAAATGA
CAAATTCTTTCTTCCCTTTCCTTTTTTAAAAAATTTTTTTTTCGGTTTGG
GGATTTTTTCGGGGGGGTTTCCATCCTGGAATATAATT
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