DY305576

Overview
NameDY305576
Unique NameDY305576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1246
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.255e-20
Identity = 69/221 (31.22%), Postives = 104/221 (47.06%), Query Frame = 3
Query:  102 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI 749
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEV 207          
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.255e-20
Identity = 69/221 (31.22%), Postives = 104/221 (47.06%), Query Frame = 3
Query:  102 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI 749
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEV 207          
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: BAIH_EUBSP (NADH-dependent flavin oxidoreductase OS=Eubacterium sp. (strain VPI 12708) GN=baiH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.418e-18
Identity = 69/222 (31.08%), Postives = 100/222 (45.05%), Query Frame = 3
Query:  102 LLTPYNMGSLNLSHRVVLAPLTR--QRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 758
            L +P  +GSL LS+RV +AP++   + +   VP+  A ++  +     G ++ +A  +        +T  +   E V  +K   D V   G     QI H G  S   Y+            PL P    N    A     R +  DEI  I+  F  AAR A EAG   I LH AH Y++   F+    N R D+YGGSL+NR RF +E++E     +  D
Sbjct:    8 LFSPLQIGSLTLSNRVGMAPMSMDYEAADGTVPKRLADVFVRRAEGGTGYVMIDAVTIDSKYPYMGNTTALDRDELVPQFKEFADRVKEAGSTLVPQIIHPGPESVCGYRHIA---------PLGPSANTN----ANCHVSRSISIDEIHDIIKQFGQAARRAEEAGCGAISLHCAHAYMLPGSFLSPLRNKRMDEYGGSLDNRARFVIEMIEEARRNVSPD 216          
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: STCD_RHIME (Probable N-methylproline demethylase OS=Rhizobium meliloti GN=stcD PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.946e-18
Identity = 62/227 (27.31%), Postives = 110/227 (48.46%), Query Frame = 3
Query:   90 PIIPLLTPYNMGSLNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWT-----KEQVEAW-KPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIG 752
            P  PLL PY +  L L +R+++         + +P+     Y  +R  +GG+ +    G +  ++   D+P ++      ++++  W + + DAVH +G +   Q+ H+GR +  D       P+ +         RA          P+++   +I +I+ DF  AA      G DG+EL  A+G+LIDQF     N+    YGGSL+NR RF  ++++A+   +G
Sbjct:    2 PNDPLLQPYQLKHLTLRNRIIVTAHEPAYPEDGMPKERYRAYTVERA-RGGVAMTMTAGSAAVSK---DSPPVFNNLLAYRDEIVPWIREMTDAVHEEGAVIMIQLTHLGRRTRWD--KGDWLPVVAPSHHREAAHRAF---------PKKIEDWDIDRIIKDFADAAERMKAGGMDGVELE-AYGHLIDQFASPLTNELDGPYGGSLDNRMRFCFDVLKAIRARVG 212          
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: DHTM_METME (Trimethylamine dehydrogenase OS=Methylophilus methylotrophus GN=tmd PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 4.179e-16
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  306 IWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRGWDKTISVCKLYG 800
            IW +  V   K + D VH  G +   ++W+ G      + PN    + S   P  P   A+  +   +   + +   +I Q+   +  AA+ + +AGFD + ++GAH YL  QF+    N RTD+YGGSLENR RF LE +E V + +G+D        V  +YG
Sbjct:   78 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGA-----HAPN----MESRATPRGPSQYASEFETLSYC--KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYG 231          
BLAST of DY305576 vs. ExPASy Swiss-Prot
Match: DHDM_HYPSX (Dimethylamine dehydrogenase OS=Hyphomicrobium sp. (strain x) GN=dmd PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.065e-11
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 3
Query:  297 TPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQ---FTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRGWDKTISVCKLYGIR 806
            T  IW +  +   + +VD VH+ G +  C++++ G        P+  A  S T      Q  +    +     FT       DE+ ++   +  AA  A + GFD + ++GAH Y   Q++    N RTD+YGGS +NR RF +E +E +   +  D       +   LYG +
Sbjct:   75 TARIWDQGDMRNLRAMVDHVHSHGSLAGCELFYGG--------PHAPAIESRTISRGPSQYNSEFATVPGCPGFTYNHEADIDELERLQQQYVDAALRARDTGFDLVNVYGAHAYGPMQWLNPYYNRRTDKYGGSFDNRARFWIETLEKIRRAVNDDVALVTRCATDTLYGTK 239          
The following BLAST results are available for this feature:
BLAST of DY305576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NAMA_BACC31.255e-2031.22NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH1.255e-2031.22NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
BAIH_EUBSP3.418e-1831.08NADH-dependent flavin oxidoreductase OS=Eubacteriu... [more]
STCD_RHIME9.946e-1827.31Probable N-methylproline demethylase OS=Rhizobium ... [more]
DHTM_METME4.179e-1632.73Trimethylamine dehydrogenase OS=Methylophilus meth... [more]
DHDM_HYPSX1.065e-1127.75Dimethylamine dehydrogenase OS=Hyphomicrobium sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1CA07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305576 ID=DY305576; Name=DY305576; organism=Citrus sinensis; type=EST; length=1246bp
GGCTTGTAATTCTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAA
AATCAAGAAGAGAACAACGGTAACATGGCCATTGAAACTCCCATCATCCC
TCTTCTCACTCCTTACAATATGGGCAGTCTCAATCTTTCTCATAGAGTTG
TTTTGGCACCACTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCA
CATGCCATTTTGTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTAT
AGCCGAAGCCACTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACAC
CTGGTATCTGGACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGAT
GCTGTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGATTTGGCACGTTGG
CAGGGTTTCAAATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCA
GTACAGACAAGCCATTGACCCCTCAAATCCGCGCTAATGGTGTTGATATT
GCACAATTCACTCCTCCAAGGCGGCTAAGGACAGATGAAATCCCTCAAAT
TGTGAATGATTTCAGGCTTGCTGCAAGAAACGCAATTGAGGCTGGTTTTG
ATGGCATTGAGCTCCACGGTGCACATGGCTACCTAATTGACCAATTTATG
AAGGATCAAGTGAATGATCGAACAGACCAGTATGGAGGATCCTTAGAGAA
TCGTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTTTCCAATGAAATAG
GGGCAGATAGGGGTTGGGATAAGACTATCTCCGTTTGCAAACTATATGGA
ATCAGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACATGGCAAAATCCT
TGAACAAATATGGTATCCTCTATTGTCACATGGTTGGAGCCAGGGATGAA
AACAGTTGGAGAAAAATCTGAATGTCCCTCAAGTTTGCTGCCCCTGAAAG
GGCTTTCAAGGGTAATTTTTCTGGCCCCTGGGGGTTTTGAACGGGGAAGA
AGGGAAACAAAGCTATGGCTGAAAGGCGTGGCGAATCTTGTTGTTTTTGG
GTCCCCTGTTGTCTGGGCCTATATAAAAAATAACCCCGAAAAATTTTGAT
CCAATTGTCCCCCCTTAAATTAAATTACAAAAAAAAAAACATTTTCCACA
CAATCCCACACTTCTTTTTTTGGTGGGGTTTACCACCGAAAATTTTTCCC
TATTTTTCCCCAACACCACCCTTCTTTCTCTTTGGGGGTTTTACAC
back to top