DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIA (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.27) GN=speE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.179e-42
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +LV+ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.539e-42
Identity = 100/240 (41.67%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +L++ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLIITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE2_PSEAE (Spermidine synthase 2 OS=Pseudomonas aeruginosa GN=speE2 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.303e-41
Identity = 88/229 (38.43%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  163 KWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKE--VFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASD 840
            ++ + L RVL++G + +Q++ + DT  + +VL++DG +QSAE DE +YHE L+ P +L H  P+ V I+GGGEG+  RE L H S+   VM D+D+E+V+ CR  L   +Q AF   +  L+  D +A LE+    +DV+  D+ D ++ GP   LYT+ FYE +L  +L   G+   Q      F+H +    +++  T++ VF  V +Y A VPSF  +WG  +ASD
Sbjct:   43 QYVYRLRRVLYQGRTRWQNVLIADTYNYDRVLMLDGAIQSAESDESLYHELLVQPAMLAHDEPRDVLIIGGGEGATLREVLSHASVRRAVMVDLDRELVELCREHLFQWHQGAFDDPRCELLAEDGRAYLERDPSLYDVVIIDVVDMLDNGPAQALYTRQFYE-LLHSRLRPGGVVAVQGLE---FSHSDDKPHAALARTLRSVFSQVHSYRATVPSFLSSWGFLLASD 267          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SYNJB (Spermidine synthase OS=Synechococcus sp. GN=speE PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.717e-39
Identity = 90/230 (39.13%), Postives = 138/230 (60.00%), Query Frame = 1
Query:  175 ALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLL----CHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTG-IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHP 846
            A+ R+L    + FQ++ + +T  FGK L++DG  QS  VDEF+YHE L+HP ++        P+ V ++GG EG+  RE L+ +S+E VVM DID EVV  CR  L  ++Q +F   ++ +V+ DA   L++    +DVI  DL+DP+E GP Y+L+T+ F+ +I + KL  +G F  QAGPTG +  H+   + I  T+K VF  V  Y  + P++    G  +A+  P
Sbjct:   23 AVTRILAYRKTPFQEMLIAETGAFGKGLMLDGHWQSTTVDEFLYHEALVHPAMVQVVQAGGIPRRVLVLGGAEGATLREVLRWRSVEQVVMVDIDGEVVAACREHLPEMHQGSFEDPRVEVVIADALDFLQETGPIWDVILSDLSDPIESGPAYRLFTQEFFRQI-RSKLQPDGAFTIQAGPTGPVELHQH--TRIVRTLKTVFAAVQPYAIYAPTYGGPLGFALAAQDP 249          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SYNJA (Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.906e-39
Identity = 90/232 (38.79%), Postives = 136/232 (58.62%), Query Frame = 1
Query:  175 ALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLL----CHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTG---IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHP 846
            A+ R+L    + FQ++ + +T  +GK L++DG  QS   DEF+YHE L+HP L+        P+ V I+GG EG+  RE L+ +S+E VVM DID EVV+ CR  L  ++Q +F   +  +V+ DA   L +    +D I  DL+DPVE GP Y+L+T+ F+ ++ + KL   G FV QAGPTG   ++ H    + I +T+K VF  V  Y  + P++    G  +A+  P
Sbjct:   23 AITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAGGIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADPRAEVVIADALDFLGQTEPIWDAILSDLSDPVEAGPAYRLFTQEFFRQV-RSKLQTAGAFVIQAGPTGPVELWQH----TRIVHTLKTVFAAVQPYAIYAPTYGGPLGFALAAQDP 249          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.033e-38
Identity = 81/236 (34.32%), Postives = 138/236 (58.47%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-AKTWGMGMAS 837
            WF E  D++L++S  +   L    + +Q +A+LDT +FG+VL +DG +Q+ E DEF+YHE ++H PL  H+NPK+V I+GGG+G + RE LKH S+E VV+ +ID+ VV   +++L    +A    ++ +++ D    + +   +FDV+  D  DP+  GP   L+T  FY+ + +  L ++GI V Q      F + ++ + +    K+++    AY A +P++    W   M S
Sbjct:    4 WFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CLKEDGIIVAQT--ESPFIYGKLINKLSKMFKEIYPITKAYIATIPTYPGSLWTFTMGS 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.033e-38
Identity = 81/236 (34.32%), Postives = 138/236 (58.47%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-AKTWGMGMAS 837
            WF E  D++L++S  +   L    + +Q +A+LDT +FG+VL +DG +Q+ E DEF+YHE ++H PL  H+NPK+V I+GGG+G + RE LKH S+E VV+ +ID+ VV   +++L    +A    ++ +++ D    + +   +FDV+  D  DP+  GP   L+T  FY+ + +  L ++GI V Q      F + ++ + +    K+++    AY A +P++    W   M S
Sbjct:    4 WFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CLKEDGIIVAQT--ESPFIYGKLINKLSKMFKEIYPITKAYIATIPTYPGSLWTFTMGS 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_CALS8 (Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.761e-38
Identity = 82/247 (33.20%), Postives = 141/247 (57.09%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-AKTWGMGMASDHPFPIMLRKS 870
            WF E    DL ++  + + ++   +++QD+A+L+TK+FGK+LV+DG +Q+  VDEF YHE + H PL  H NPK V ++GGG+G   RE LKH+ +E   + +IDQEV++  +++L     A   K+  +++ D    + +    FDVI  D  DPV  GP   L+  +FY+ + +  L ++G+FV Q      F  +++  +++++IK +F     Y   +P++ +  W   M S    P+ +  S
Sbjct:    7 WFTEQQTPDLGFTCKITKTIYTAKTKYQDLAILETKQFGKMLVLDGAVQTTIVDEFCYHELIAHVPLFTHPNPKKVAVIGGGDGGVIREILKHEEVEKAYLIEIDQEVIEASKKYLPEISCALDDKRAEVIITDGIKFVSENKNMFDVIIVDSTDPV--GPAVGLFESNFYQAVYE-CLKEDGLFVAQT--ESPFYDQDLIRNVFHSIKSIFPITRLYLGFIPTYPSGLWSFTMGSKKYDPLEIDTS 248          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.761e-38
Identity = 83/236 (35.17%), Postives = 136/236 (57.63%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-AKTWGMGMAS 837
            WF E  D++L++S  +   L    + +Q +A+LD+ +FG+VLV+DG +Q+ E DEF+YHE ++H PL  H+NPK V I+GGG+G + RE LKH S+E VV+ +ID+ V+   +++L     A    ++ +++ D    + +   +FDV+  D  DP+  GP   L+T  FY R +   L ++GI V Q      F + ++ + I    K+++    AY A VP++    W   M S
Sbjct:    4 WFTEHQDENLRFSIKVKETLVVEKTPYQHLAILDSYQFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLIIGGGDGGSVREVLKHSSVERVVLAEIDEAVIRNSKKYLPTISSALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFY-RAVYECLREDGIIVAQT--ESPFIYGKLINKISKMFKEIYPITKAYIATVPTYPGSLWTFTMGS 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.300e-38
Identity = 86/253 (33.99%), Postives = 147/253 (58.10%), Query Frame = 1
Query:  103 NINGNLQDCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSF-AKTWGMGMASDHPFPI 855
            N N + +   WF E  ++++  S  +  +L++  S FQ+I ++DT  FGK L++D   Q+ E DEFIYHE + H PL  H NP+ V ++GGG+G   RE +KHKS+E+V   ++D++V++ C++++        ++K+NL++ D    + +  +K+DVI  D  DPV  GP   L+ K FY+ + K  LND+GI V Q+       + ++  +I   +K   FK ++ YT  +P++ +  W   +AS    P+
Sbjct:    2 NQNNDFKCHIWFTEYHNNNVALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREVVKHKSVETVDFVELDEKVIEACKKYMPKLSCEIDNEKVNLIITDGIKYVAETEKKYDVIIVDCPDPV--GPAKGLFEKEFYKNVFK-CLNDDGIMVQQS--ESPLYNLDLIQNICRYLKDAGFKIIMPYTYPMPTYPSGFWSFTLASKKYNPL 249          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_SULIA1.179e-4242.08Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIN1.539e-4241.67Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE2_PSEAE1.303e-4138.43Spermidine synthase 2 OS=Pseudomonas aeruginosa GN... [more]
SPEE_SYNJB2.717e-3939.13Spermidine synthase OS=Synechococcus sp. GN=speE P... [more]
SPEE_SYNJA7.906e-3938.79Spermidine synthase OS=Synechococcus sp. (strain J... [more]
SPEE_THEPX1.033e-3834.32Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP31.033e-3834.32Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE_CALS81.761e-3833.20Spermidine synthase OS=Caldicellulosiruptor saccha... [more]
SPEE1_THETN1.761e-3835.17Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]
SPEE_METJA2.300e-3833.99Probable spermidine synthase OS=Methanocaldococcus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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