DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.004e-38
Identity = 82/244 (33.61%), Postives = 140/244 (57.38%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAK---TWGMGMASDHPFPI 855
            WF E   +    +  + R LH   ++FQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NPK V ++GGG+G A RE LKH S+E   + DID +V+++ + +L     A   +++++ V D    + +   ++DVI  D  +PV  GP  +L+ + FYE I K  L ++GIFV Q      + H+E+ S++Y  +K++F     YTA++P++     T+ +G     P  +
Sbjct:    4 WFTEKQTERFGITMKIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTYLPTIACALEDERVDVKVADGFMHIAQSANEYDVIMVDSTEPV--GPAAKLFERGFYEGISK-ALKEDGIFVAQT--DNPWFHQELVSNVYKDVKEIFPITRLYTANIPTYPSGMWTFTIGSKKHDPLAV 242          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_THEON (Probable spermidine synthase OS=Thermococcus onnurineus (strain NA1) GN=speE PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.924e-38
Identity = 85/228 (37.28%), Postives = 136/228 (59.65%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWG--MGMASDHPF 849
            F +   L +  +++Q + L +T+ FGK+LV+DG +Q  E+ E  YHE L+HP +L H NP+ V I+GGG+G   RE L+HK++E  +M +ID+ V++  R ++ V + AF   +  L+V+D    L+  +EKFDVI  D  DPV  GP   L+++ F+    + KLNDNG+++TQAG   +FT++      Y  + +VF  V  ++  V  +A  W   +G+  D  F
Sbjct:   22 FRVKERLFETQTKYQRLELYETEGFGKLLVLDGTVQLVEMGEESYHEPLVHPVMLAHPNPRRVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDPRAELIVSDGVEYLKNTDEKFDVIIVDSTDPV--GPAKMLFSEGFFRNAYE-KLNDNGLYITQAGSVYLFTNE--LLDAYRDMGKVFDEVHYFSFPVIGYASPWSFLVGVKGDINF 244          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_BACHD (Spermidine synthase OS=Bacillus halodurans GN=speE PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.666e-37
Identity = 76/225 (33.78%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+ E   +    +  + R LH   ++FQ + +++T+ FG +LV+DG + + E DEF+YHE + H PL  H NPK V ++GGG+G   RE LKH S+E   + +ID +V+++ +++L     A    ++++ V+D    + K    +DVI  D  +PV  GP  +L+ K FY+ I K  L ++GIFV Q      + H E+   +Y  ++++F     YTA++P++
Sbjct:    4 WYTEKQTEHFGITAKIKRTLHTEKTDFQQLDVIETEEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPKHVLVVGGGDGGVIREVLKHPSVEKATLVEIDGKVIEYSKKYLPSIATALNDPRVDVQVDDGFLHIAKAESAYDVIMVDSTEPV--GPAVKLFEKGFYQGIAK-ALKEDGIFVAQT--DNPWFHGELIRKVYADVQEIFPITRLYTANIPTY 223          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTH (Spermidine synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=speE PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.400e-37
Identity = 78/225 (34.67%), Postives = 131/225 (58.22%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            WF E     L  +    + LH   +E+Q++A+++T++FG++L++DG +Q+   DEF+YHE + H PL  H+NPK   ++GGG+G + RE +KH S+E  V+C+ID+ V++  + +L     A  ++K+ +VV D    +++   +FDVI  D  DP+  GP   L+   FY R +   L ++GIFV Q      F  KE+ + I   +K +F     YT  +P++
Sbjct:    4 WFTEYQTPTLGITCKTKKTLHSEKTEYQELAVIETEQFGRMLLLDGIIQTTVADEFVYHEMIAHVPLFTHKNPKKALVVGGGDGGSIREIVKHPSIEKAVLCEIDRRVIEVSKEYLPEISCALDNEKVEVVVGDGIKYVKEHKNEFDVIIIDSTDPI--GPAEGLFAIDFY-RAVYDCLKEDGIFVAQT--ESPFIDKELITRIIRDVKSLFPITRLYTCAIPTY 223          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_BACCR (Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speE1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.400e-37
Identity = 81/245 (33.06%), Postives = 139/245 (56.73%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAK---TWGMGMASDHPFPIM 858
            WF E        +  +NR LH   +EFQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NP+ V I+GGG+G   RE LKH S++   + +ID +V+++ +++L     A  ++++ + V D    + +   ++DVI  D  +PV  GP   L+TK FY  I K  L ++GIFV Q      FT  E+ ++++  +K++F     YTA++P++     T+ +G     P  ++
Sbjct:    4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLIVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISK-ALKEDGIFVAQT-DNPWFT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLWTFTIGSKKHDPLEVI 243          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_YERE8 (Spermidine synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=speE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 83/226 (36.73%), Postives = 130/226 (57.52%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F++  VL++  +E QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H   K V I+GGG+G+  RE  +HK++E + M +ID  VV+FCR++L  +   A+   +  LV++D    + +  EKFDVI  D  DP+  GP   L+T +FYE   +  LN+ GIFV Q G    F  ++     +N +   FK V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTEKFDVIISDCTDPI--GPGESLFTSAFYEGCAR-SLNEGGIFVAQNGV--CFLQQDEAVDSHNKLSHYFKDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 83/225 (36.89%), Postives = 129/225 (57.33%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     F+++ VL+   ++ QD+ + D + FG+V+ +DG +Q+ E DEFIYHE + H PLL H N K V I+GGG+G+  RE  +H+S+E++ M +ID  VV FCR++L   N  A+   +  LV++D    + +  + FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F+ V  Y A +P++
Sbjct:    7 WHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGAYDDPRFTLVIDDGVNFVNQTTQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEAVGSHRKLSHYFRDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PYRCJ (Probable spermidine synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=speE PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.262e-36
Identity = 90/242 (37.19%), Postives = 135/242 (55.79%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELE---KRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            +N +     S +Q+I + DT+ +G+VL++D  +QS+ VDE  YHE L+HP +  H NP+ V I+GGGEG+  REALKH +++  VM DID++VV+  R +L  ++Q AF   +  +V+ D    +E   K  +K+DVI  DL DP       QLYT+ F+ +I +  LND+G+ VTQAG +  F  +  +  +   +K  F  V  Y   +PSF       + S    P  L  S    R R
Sbjct:   24 INAIHSVKKSPYQEIIIADTEDYGRVLILDDYIQSSYVDEQYYHESLVHPAMATHPNPRDVLILGGGEGATLREALKHGTVKRAVMVDIDRDVVELSRAYLPQMHQGAFDDPRAKVVIQDGFVYVEEAIKAGDKYDVIIMDLTDPYSSDIAKQLYTREFFAKI-RRILNDDGVVVTQAGNSFYFPAE--YDMVLEGVKANFPIVAEYEVWIPSFGYAVNFILGSLRYDPHALTPSEVDERLR 262          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_BACC1 (Spermidine synthase OS=Bacillus cereus (strain ATCC 10987) GN=speE PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.262e-36
Identity = 80/244 (32.79%), Postives = 138/244 (56.56%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAK---TWGMGMASDHPFPI 855
            WF E        +  +NR LH   +EFQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NP+ V ++GGG+G   RE LKH S++   + +ID +V+++ +++L     A  ++++ + V D    + +   ++DVI  D  +PV  GP   L+TK FY  I K  L ++GIFV Q      FT  E+ ++++  +K++F     YTA++P++     T+ +G     P  +
Sbjct:    4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISK-ALKEDGIFVAQT-DNPWFT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLWTFTIGSKKHDPLEV 242          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_BACAN (Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.262e-36
Identity = 80/244 (32.79%), Postives = 138/244 (56.56%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAK---TWGMGMASDHPFPI 855
            WF E        +  +NR LH   +EFQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NP+ V ++GGG+G   RE LKH S++   + +ID +V+++ +++L     A  ++++ + V D    + +   ++DVI  D  +PV  GP   L+TK FY  I K  L ++GIFV Q      FT  E+ ++++  +K++F     YTA++P++     T+ +G     P  +
Sbjct:    4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISK-ALKEDGIFVAQT-DNPWFT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLWTFTIGSKKHDPLEV 242          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_BACSK3.004e-3833.61Spermidine synthase OS=Bacillus clausii (strain KS... [more]
SPEE_THEON3.924e-3837.28Probable spermidine synthase OS=Thermococcus onnur... [more]
SPEE_BACHD5.666e-3733.78Spermidine synthase OS=Bacillus halodurans GN=speE... [more]
SPEE_CLOTH7.400e-3734.67Spermidine synthase OS=Clostridium thermocellum (s... [more]
SPEE1_BACCR7.400e-3733.06Spermidine synthase 1 OS=Bacillus cereus (strain A... [more]
SPEE_YERE89.664e-3736.73Spermidine synthase OS=Yersinia enterocolitica ser... [more]
SPEE_KLEP79.664e-3736.89Spermidine synthase OS=Klebsiella pneumoniae subsp... [more]
SPEE_PYRCJ1.262e-3637.19Probable spermidine synthase OS=Pyrobaculum calidi... [more]
SPEE_BACC11.262e-3632.79Spermidine synthase OS=Bacillus cereus (strain ATC... [more]
SPEE1_BACAN1.262e-3632.79Spermidine synthase 1 OS=Bacillus anthracis GN=spe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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