DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XANOP (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.018e-22
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F ++  L +  S FQ I +  T  +GK+++IDG +     D F YHE + HP L  H  PK V I+GGG+    RE LKH  +ES   CDID++V     ++     ++    +  L+ +D  A +        D++  D  DPV  GP   L+ K+FYE   K  L D+G+ V Q+
Sbjct:   21 FRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPV--GPAEGLFNKAFYESCFK-ALKDDGLLVQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XANOM (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.018e-22
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F ++  L +  S FQ I +  T  +GK+++IDG +     D F YHE + HP L  H  PK V I+GGG+    RE LKH  +ES   CDID++V     ++     ++    +  L+ +D  A +        D++  D  DPV  GP   L+ K+FYE   K  L D+G+ V Q+
Sbjct:   21 FRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPV--GPAEGLFNKAFYESCFK-ALKDDGLLVQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PROM3 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=speE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.942e-22
Identity = 69/217 (31.80%), Postives = 114/217 (52.53%), Query Frame = 1
Query:  184 RVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKA-ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYE---RILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTW 819
            RVL    S +Q I ++D+ R+GK L++DG   +AE  E  YHE L+HP L      + V ++GGG+G  ARE L+++ ++ + M +ID  VV+  ++ L ++   A+   +L L + D  A      +  +DVI  D +DP   GP   L+ ++F++   RIL+P     G+F TQ+     F  +++       I+QVF +       VP +   W
Sbjct:   26 RVLVDEKSPYQRITVIDSSRYGKGLLLDGCWMTAEHQERHYHESLVHPALCSAAQLERVLVIGGGDGGTARECLRYQDVKHLDMVEIDGRVVELSQKHLPSIGGHAWSDARLQLNLEDGIAWTANATDSSYDVILVDGSDPT--GPAEGLFNEAFFKQCRRILRP----GGVFATQSESPEAF--RQIHIDTVRLIRQVFGYADPLYGWVPMYPSGW 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_STRMK (Spermidine synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=speE PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.782e-22
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  205 SEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            S FQ I +  T  +G ++ IDG +     D F YHE + HP L  H  PK V I+GGG+    RE LKH  +ESV  CDID++V    R+      ++    +  L+ +D  A +        DV+  D  DPV  GP   L+ K+FYE   K  L D+GI V Q+
Sbjct:   32 SPFQKIEIFQTTDWGNLMTIDGAIMLTSKDNFFYHEMISHPVLFTHAAPKRVVIIGGGDCGTLREVLKHTGVESVTQCDIDEQVTVMARKHFPELCDSNDDARAELLFDDGVAYMANCPAGSVDVVIVDSTDPV--GPGEGLFNKAFYESCFK-ALKDDGILVQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFA (Spermidine synthase OS=Xylella fastidiosa GN=speE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.498e-21
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F +   L +  S FQ I + ++  +GK++VIDG +     D F+YHE + HP L  H  PK V I+GGG+    RE LKH  +E V  CDID++V     +       +    +  L+ +D  A + +      DVI  D  DPV  GP   L+ ++FYE   +   ND G+ V Q+
Sbjct:   21 FRITGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMTDCPTNSVDVIIVDSTDPV--GPAKGLFNRTFYESCFRALKND-GLLVQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_STRM5 (Spermidine synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=speE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.498e-21
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  205 SEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            S FQ I +  T  +G ++ IDG +     D F YHE + HP L  H  PK V I+GGG+    RE LKHK +ESV  CDID++V    R+      ++    +  L+ +D  A +        DV+  D  DPV  GP   L+ K+FY    K  L D+GI V Q+
Sbjct:   32 SPFQKIEIFRTTDWGNLMTIDGAIMLTSKDNFFYHEMISHPVLFTHAAPKRVVIIGGGDCGTLREVLKHKGVESVTQCDIDEQVTVMARKHFPELCDSNDDARAELLFDDGVAYMANCPAGSVDVVIVDSTDPV--GPGEGLFNKAFYASCFK-ALKDDGILVQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFM (Spermidine synthase OS=Xylella fastidiosa (strain M12) GN=speE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.956e-21
Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F +   L +  S FQ I + ++  +GK++VIDG +     D FIYHE + HP L  H  PK V I+GGG+    RE LKH  +E V  CDID++V     +       +    +  L+ +D  A + +      DVI  D  DP+  GP   L+ ++FYE   +   ND G+ + Q+
Sbjct:   21 FRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFIYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPI--GPAKGLFNRTFYESCFRALKND-GLLIQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFT (Spermidine synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.555e-21
Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F +   L +  S FQ I + ++  +GK++VIDG +     D F+YHE + HP L  H  PK V I+GGG+    RE LKH  +E V  CDID++V     +       +    +  L+ +D  A + +      DVI  D  DPV  GP   L+ ++FYE   +   ND G+ + Q+
Sbjct:   21 FRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPV--GPAKGLFNRTFYESCFRALKND-GLLIQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_XYLF2 (Spermidine synthase OS=Xylella fastidiosa (strain M23) GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.555e-21
Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            F +   L +  S FQ I + ++  +GK++VIDG +     D F+YHE + HP L  H  PK V I+GGG+    RE LKH  +E V  CDID++V     +       +    +  L+ +D  A + +      DVI  D  DPV  GP   L+ ++FYE   +   ND G+ + Q+
Sbjct:   21 FRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPV--GPAKGLFNRTFYESCFRALKND-GLLIQQS 194          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_NITOC (Spermidine synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=speE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.402e-19
Identity = 62/191 (32.46%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  133 WFEEVIDDD-LKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA-KAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 699
            WF EV  +  L +S A+   LH  T+ +Q I +  T+ FG+++VIDG +  +  D F YHE + HP L  H +P+ V I+GGG+    RE LKH  +E V   +ID+ V     ++     ++    + +    D  +   E      DVI  D  DP+  G    L+  SFY    +  L + GI V Q+
Sbjct:    8 WFTEVCKEGGLAFSLAIREKLHAETTPYQYIEIYQTETFGRLMVIDGFIMLSGRDNFFYHEMMAHPVLFTHPHPQRVLIIGGGDCGTLREVLKHDVVEKVQQVEIDERVTRLAEKYFPELCQSNDDPRAHFHFGDGLRFVAEAPANSVDVIIIDSTDPI--GSAEGLFQASFYADCQR-LLGEKGILVHQS 195          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_XANOP3.018e-2234.46Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANOM3.018e-2234.46Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_PROM33.942e-2231.80Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_STRMK8.782e-2237.35Spermidine synthase OS=Stenotrophomonas maltophili... [more]
SPEE_XYLFA1.498e-2134.46Spermidine synthase OS=Xylella fastidiosa GN=speE ... [more]
SPEE_STRM51.498e-2137.35Spermidine synthase OS=Stenotrophomonas maltophili... [more]
SPEE_XYLFM1.956e-2133.90Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLFT2.555e-2133.90Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLF22.555e-2133.90Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_NITOC1.402e-1932.46Spermidine synthase OS=Nitrosococcus oceani (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
back to top