DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_STRCO (Probable spermidine synthase 1 OS=Streptomyces coelicolor GN=speE1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.123e-19
Identity = 66/224 (29.46%), Postives = 108/224 (48.21%), Query Frame = 1
Query:  187 VLHKGTSEFQDIALLDTKRFGKV----LVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRF---LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMA 834
            ++H  T+++QDI +  +  F       L ++G +Q + VDE+ YHE L+HP L   H N   V IMGGG+G A RE L+H+ +  V + ++D  +    R F     +NQ +    +  +V  DA   L +  +++D +  D  DP +     +LY+  FY+ + +    D  + V    P   F   + + SI  TI+        +   VPSF   WG  +A
Sbjct:  254 IIHSETTQYQDIVVTRSTAFTGEPDVRLFLNGDLQFSSVDEYRYHESLVHPALSGPHSN---VLIMGGGDGLALREVLRHEGVRHVTLVELDPAMTRLARTFEPLRKLNQGSLDDPRAKVVNADAFTWLREARQQYDAVIIDFPDP-DSASLAKLYSVEFYDLLRRVLAPDGQVMVQSGSP---FFAPKTYWSIAKTIETAGYATTEFQIDVPSFG-NWGFVLA 469          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_RHOBA (Probable spermidine synthase OS=Rhodopirellula baltica GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.453e-18
Identity = 62/220 (28.18%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  184 RVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRF---LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMA 834
            R+++  TS +Q IA+   ++ G  L ++G +Q   VDE+ YHE L+HP +   ++ + V ++GGG+G A RE L++  +ESV + D+D  +     +F     +N  +    ++ +V  DA   + + +E+FD +  D  DP       +LY+  FY  + +    D G+ +    P       + +  I  T++     V  Y A VP+F   WG  +A
Sbjct:  231 RIVYADTSPYQRIAVTRNEK-GFQLYLNGHLQFNSVDEYRYHEALVHPVMSVCKDARRVLVLGGGDGLAVREILRYDHVESVTLVDLDPAMTRLATQFEPLAELNGRSLERDRVTVVHRDAFLWVGEGDEQFDAVVIDFPDP-GNYSIGKLYSSRFYNLLRERMTEDAGLAIQCTSP---LVAPKSYWCILRTMQASGFDVTPYHAPVPTFG-IWGFALA 444          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE2_RALSO (Probable spermidine synthase 2 OS=Ralstonia solanacearum GN=speE2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.693e-18
Identity = 66/222 (29.73%), Postives = 110/222 (49.55%), Query Frame = 1
Query:  181 NRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDF---CRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMAS 837
            + ++H  +S +Q + +   K   + L I+G +Q +  DE+ YHE L+ P L   +  + V ++GGG+G A R+ LK+  +E V + D+D  +          + +NQ AF   ++ +V  DA   L+   + FDV   D  DP       +LY+  FY R+L   + D G+ V QA  T  +     +  +  T+K+       Y A VPSF + WG  +A+
Sbjct:  248 DEIIHAISSPYQRLVVTRWKDDLR-LYINGNLQFSSRDEYRYHEALVLPALESVRGARRVLVLGGGDGLALRQILKYPQVEHVTLVDLDPRMTSLFSHAEALVALNQHAFSDPRVTVVNADAGQWLQTAADMFDVAIVDFPDP-SNFSIGKLYSVPFY-RLLSRHVADTGLVVIQA--TSPYFAPRSYWCVDATLKEAGYRTWPYHALVPSFGE-WGFILAA 463          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_RALSO (Probable spermidine synthase 1 OS=Ralstonia solanacearum GN=speE1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.693e-18
Identity = 66/222 (29.73%), Postives = 110/222 (49.55%), Query Frame = 1
Query:  181 NRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDF---CRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMAS 837
            + ++H  +S +Q + +   K   + L I+G +Q +  DE+ YHE L+ P L   +  + V ++GGG+G A R+ LK+  +E V + D+D  +          + +NQ AF   ++ +V  DA   L+   + FDV   D  DP       +LY+  FY R+L   + D G+ V QA  T  +     +  +  T+K+       Y A VPSF + WG  +A+
Sbjct:  233 DEIIHAISSPYQRLVVTRWKDDLR-LYINGNLQFSSRDEYRYHEALVLPALESVRGARRVLVLGGGDGLALRQILKYPQVEHVTLVDLDPRMTSLFSHAEALVALNQHAFSDPRVTVVNADAGQWLQTAADMFDVAIVDFPDP-SNFSIGKLYSVPFY-RLLSRHVADTGLVVIQA--TSPYFAPRSYWCVDATLKEAGYRTWPYHALVPSFGE-WGFILAA 448          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_MYCTU (Probable spermidine synthase OS=Mycobacterium tuberculosis GN=speE PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.451e-16
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 1
Query:  205 SEFQDIALLDTKRFGKV-LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMA 834
            S +Q+I +  T+R   + L +DG +Q    DE+ Y E L++P +      ++V ++GGG+G AARE L+   +E +V  ++D  V++  R  L  VN  +  + ++++V++DA + L         FD +  DL DP +     +LY+  FY  +    L   G+ V QAG    ++    F  I +TI+     V  Y  HVP+F   WG  +A
Sbjct:  258 SAYQEIVV--TRRGDDLRLYLDGGLQFCTRDEYRYTESLVYPAV--SDGARSVLVLGGGDGLAARELLRQPGIEQIVQVELDPAVIELARTTLRDVNAGSLDNPRVHVVIDDAMSWLRGAAVPPAGFDAVIVDLRDP-DTPVLGRLYSTEFY-ALAARALAPGGLMVVQAGSP--YSTPTAFWRIISTIRSAGYAVTPYHVHVPTFG-DWGFALA 463          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_MYCBO (Probable spermidine synthase OS=Mycobacterium bovis GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.451e-16
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 1
Query:  205 SEFQDIALLDTKRFGKV-LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMA 834
            S +Q+I +  T+R   + L +DG +Q    DE+ Y E L++P +      ++V ++GGG+G AARE L+   +E +V  ++D  V++  R  L  VN  +  + ++++V++DA + L         FD +  DL DP +     +LY+  FY  +    L   G+ V QAG    ++    F  I +TI+     V  Y  HVP+F   WG  +A
Sbjct:  258 SAYQEIVV--TRRGDDLRLYLDGGLQFCTRDEYRYTESLVYPAV--SDGARSVLVLGGGDGLAARELLRQPGIEQIVQVELDPAVIELARTTLRDVNAGSLDNPRVHVVIDDAMSWLRGAAVPPAGFDAVIVDLRDP-DTPVLGRLYSTEFY-ALAARALAPGGLMVVQAGSP--YSTPTAFWRIISTIRSAGYAVTPYHVHVPTFG-DWGFALA 463          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_COREF (Probable spermidine synthase OS=Corynebacterium efficiens GN=speE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.221e-16
Identity = 70/238 (29.41%), Postives = 116/238 (48.74%), Query Frame = 1
Query:  187 VLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELE---KRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSR 885
            V++   S++QDI +   +   + L ++G +Q +  DE  Y E L++P L    + +T  I+GGG+G AARE L+   +  +   ++D EV++     L   N  A    ++ ++ +DA   L       +++D IF DL DP       +LY++ FY   L  +LND G  V Q+  +  +T  +VF  I +T+       V+ Y  HVP+F   WG  +       + LR  T   R
Sbjct:  246 VIYAHQSDYQDIVVTQ-RGADRRLYLNGGLQYSTRDEHRYTESLVYPGL--SDSARTALIIGGGDGLAARELLRFPDMR-ITQVELDPEVIEVANTILLPDNGGAMQDPRVTVITDDAFTWLRAGGDGGQRYDAIFVDLPDP-NNDTMARLYSQEFYTLAL-ARLNDGGRMVVQS--SSAYTTPDVFWRIASTMSAAGCGAVIPYHVHVPTFG-DWGFQLCGPEGTELGLRGDTPSLR 474          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHEON (Probable spermidine synthase OS=Shewanella oneidensis GN=speE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.404e-16
Identity = 63/239 (26.36%), Postives = 113/239 (47.28%), Query Frame = 1
Query:  181 NRVLHKGTSEFQDIALLDTKRFGKV-----LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVD------------FCRRFLTVNQEAFCSKKLNLVVNDAKAELEK---RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMAS 837
            ++V++   + FQ +   +  R   +     L I+G++Q +  DE IYH  L+HP L        V I+GGG+G   ++ L+ +  E V + D+D  +V               +  L++N  AF   ++ ++ +DA   ++K   + +K+D I  DL DP       +LY+  FY ++ +   ND  + V    P   +  ++ F S+  T+      V  Y  +VPSF + WG  +A+
Sbjct:  270 DKVVYAKATRFQQLTFTERLRGNGLSPVYALYINGRLQFSSSDEHIYHAFLVHPTLAASARHNKVLIIGGGDGLGLKQVLRWEP-EQVTLLDLDAALVQLFKSPDPDMPERLSQALLSLNGNAFNDPRVTVIHDDAFNGVDKLIAKGDKYDAIIVDLPDP-SHPDLNKLYSDYFYRKLKELISNDGALTVQSTSP---YHAQKAFISVAKTLALAGFDVKQYHHNVPSFGE-WGWSIAT 502          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_STRAW (Probable spermidine synthase OS=Streptomyces avermitilis GN=speE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.025e-14
Identity = 54/183 (29.51%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  256 LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRR---FLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFY---ERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAY 786
            L +DG+++ +  DE  YHE L+HP +   ++ + V ++GGG+G AARE L++  +  V + ++D  VV   RR     ++N  A+   ++++V  DA   L      +DV+  DL DP       +LY++ FY    R+L P     G  V  AGP  + +    + ++  T++      V Y
Sbjct:  292 LFLDGRLRVSGHDERRYHEALVHPAMSDGRHAR-VLVLGGGDGLAAREVLRYADVARVDVVELDAGVVRLARRDPALSSLNAHAYDDPRVHVVTADAFCRLRHTRSAYDVVISDLPDPGITAST-KLYSQEFYGLVSRVLAP----GGRLVVHAGP--VASRPRAYWTVEATVRAAGLRTVPY 466          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE2_STRCO (Probable spermidine synthase 2 OS=Streptomyces coelicolor GN=speE2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.076e-11
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  256 LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKT-VFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRR---FLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAY 786
            L +DG+++    DE  YHE L+HP +     P   V I+GGG+G AARE L+H  +  V + + D  +    R      T+N+ A+   ++ ++  DA   L    +  +DV+  DL DP       +LY++ FY  +L+  L  +G     AGP  +      F ++  T++      VAY
Sbjct:  296 LFLDGRLRVRGSDERSYHEALVHPAM---GGPHARVLILGGGDGLAAREVLRHPGVRRVDVLEADPGLARLARHDPGLSTLNEHAYGDARVRVLSGDAFHRLRATPSATYDVVISDLPDPGVTAST-KLYSQEFY-GLLRRVLAPDGRLAVHAGP--VDARPRAFWTVDATLRAAGLPAVAY 470          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE1_STRCO3.123e-1929.46Probable spermidine synthase 1 OS=Streptomyces coe... [more]
SPEE_RHOBA3.453e-1828.18Probable spermidine synthase OS=Rhodopirellula bal... [more]
SPEE2_RALSO7.693e-1829.73Probable spermidine synthase 2 OS=Ralstonia solana... [more]
SPEE1_RALSO7.693e-1829.73Probable spermidine synthase 1 OS=Ralstonia solana... [more]
SPEE_MYCTU1.451e-1630.70Probable spermidine synthase OS=Mycobacterium tube... [more]
SPEE_MYCBO1.451e-1630.70Probable spermidine synthase OS=Mycobacterium bovi... [more]
SPEE_COREF4.221e-1629.41Probable spermidine synthase OS=Corynebacterium ef... [more]
SPEE_SHEON9.404e-1626.36Probable spermidine synthase OS=Shewanella oneiden... [more]
SPEE_STRAW3.025e-1429.51Probable spermidine synthase OS=Streptomyces averm... [more]
SPEE2_STRCO1.076e-1129.67Probable spermidine synthase 2 OS=Streptomyces coe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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