DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHIBS (Spermidine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 83/225 (36.89%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N +++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN +GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNADSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPSGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAB (Probable spermidine synthase OS=Pyrococcus abyssi GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 86/236 (36.44%), Postives = 135/236 (57.20%), Query Frame = 1
Query:  169 SFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVN-------QEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWG--MGMASDHPF 849
            +F +   + +G S+FQ I + +T+ FG++L +DG +Q     E  YHE L+HP +L H NP+ V ++GGG+G   RE L+H+ +E  +M +ID+EV++   +F+ ++        +  C K+  L++ D   E  K N  FDV+  D  DPV  GP   L+++ FYER  +  LND GI+VTQAG   +FT + V  + Y  + +VF  V AY+  V  +A  W   +G+  D  F
Sbjct:   14 AFKVKEKIFEGHSKFQKIEVYETEGFGRLLALDGTVQLVTEGEESYHESLVHPVMLAHPNPRRVLVIGGGDGGTIREVLRHEEVEEAIMVEIDEEVIEVAIKFIGIDGGLLDKMMKGEC-KRAKLIIGDG-VEFIKENSGFDVVIVDSTDPV--GPAKMLFSREFYERAYE-ALNDPGIYVTQAGSVYLFTDELV--TAYENMSRVFDKVYAYSFPVIGYASPWAFLVGIKGDLDF 242          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOUT (Spermidine synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 84/225 (37.33%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + N+ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTNQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOK1 (Spermidine synthase OS=Escherichia coli O1:K1 / APEC GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 84/225 (37.33%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + N+ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTNQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECO45 (Spermidine synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 84/225 (37.33%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + N+ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTNQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECO27 (Spermidine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 84/225 (37.33%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + N+ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTNQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_BACWK (Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=speE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 80/244 (32.79%), Postives = 137/244 (56.15%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAK---TWGMGMASDHPFPI 855
            WF E        +  +NR LH   +EFQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NP+ V ++GGG+G   RE LKH S++   + +ID +V+++ +++L     A   +++ + V D    + +   ++DVI  D  +PV  GP   L+TK FY  I K  L ++GIFV Q      FT  E+ ++++  +K++F     YTA++P++     T+ +G     P  +
Sbjct:    4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDDERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISK-ALKEDGIFVAQT-DNPWFT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLWTFTIGSKKHDPLEV 242          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.153e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  +V FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     Y  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGIVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSYRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_YERPY (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=speE PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.812e-36
Identity = 82/226 (36.28%), Postives = 129/226 (57.08%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F++  VL++  +E QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H   K V I+GGG+G+  RE  +HK++E + M +ID  VV+FCR++L  +   A+   +  LV++D    + +  EKFDVI  D  DP+  GP   L+T  FYE   +  LN+ GIFV Q G    F  ++   + +N +   F  V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTEKFDVIISDCTDPI--GPGESLFTSVFYEGCAR-SLNEGGIFVAQNGV--CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_YERPS (Spermidine synthase OS=Yersinia pseudotuberculosis GN=speE PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.812e-36
Identity = 82/226 (36.28%), Postives = 129/226 (57.08%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F++  VL++  +E QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H   K V I+GGG+G+  RE  +HK++E + M +ID  VV+FCR++L  +   A+   +  LV++D    + +  EKFDVI  D  DP+  GP   L+T  FYE   +  LN+ GIFV Q G    F  ++   + +N +   F  V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTEKFDVIISDCTDPI--GPGESLFTSVFYEGCAR-SLNEGGIFVAQNGV--CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTY 226          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_SHIBS1.649e-3636.89Spermidine synthase OS=Shigella boydii serotype 4 ... [more]
SPEE_PYRAB1.649e-3636.44Probable spermidine synthase OS=Pyrococcus abyssi ... [more]
SPEE_ECOUT1.649e-3637.33Spermidine synthase OS=Escherichia coli (strain UT... [more]
SPEE_ECOK11.649e-3637.33Spermidine synthase OS=Escherichia coli O1:K1 / AP... [more]
SPEE_ECO451.649e-3637.33Spermidine synthase OS=Escherichia coli O45:K1 (st... [more]
SPEE_ECO271.649e-3637.33Spermidine synthase OS=Escherichia coli O127:H6 (s... [more]
SPEE_BACWK1.649e-3632.79Spermidine synthase OS=Bacillus weihenstephanensis... [more]
SPEE_SHISS2.153e-3636.89Spermidine synthase OS=Shigella sonnei (strain Ss0... [more]
SPEE_YERPY2.812e-3636.28Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPS2.812e-3636.28Spermidine synthase OS=Yersinia pseudotuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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